Gene : Eucgr.I01602 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1325
Name:  ? Eucgr.I01602 Secondary Identifier:  ? PAC:32062552
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I01602 0.5kb upstream 0.5kb upstream 4219 true Chr09: 25933598-25937816 Eucalyptus grandis
Eucgr.I01602 0.5kb upstream 0.5kb upstream 500 false Chr09: 25933598-25934097 Eucalyptus grandis
Eucgr.I01602 0.5kb downstream 0.5kb downstream 4219 true Chr09: 25934098-25938316 Eucalyptus grandis
Eucgr.I01602 0.5kb downstream 0.5kb downstream 500 false Chr09: 25937817-25938316 Eucalyptus grandis
Eucgr.I01602 1.0kb upstream 1.0kb upstream 4719 true Chr09: 25933098-25937816 Eucalyptus grandis
Eucgr.I01602 1.0kb upstream 1.0kb upstream 1000 false Chr09: 25933098-25934097 Eucalyptus grandis
Eucgr.I01602 1.0kb downstream 1.0kb downstream 4719 true Chr09: 25934098-25938816 Eucalyptus grandis
Eucgr.I01602 1.0kb downstream 1.0kb downstream 1000 false Chr09: 25937817-25938816 Eucalyptus grandis
Eucgr.I01602 2.0kb upstream 2.0kb upstream 5719 true Chr09: 25932098-25937816 Eucalyptus grandis
Eucgr.I01602 2.0kb upstream 2.0kb upstream 2000 false Chr09: 25932098-25934097 Eucalyptus grandis
Eucgr.I01602 2.0kb downstream 2.0kb downstream 5719 true Chr09: 25934098-25939816 Eucalyptus grandis
Eucgr.I01602 2.0kb downstream 2.0kb downstream 2000 false Chr09: 25937817-25939816 Eucalyptus grandis
Eucgr.I01602 5.0kb upstream 5.0kb upstream 8719 true Chr09: 25929098-25937816 Eucalyptus grandis
Eucgr.I01602 5.0kb upstream 5.0kb upstream 5000 false Chr09: 25929098-25934097 Eucalyptus grandis
Eucgr.I01602 5.0kb downstream 5.0kb downstream 8719 true Chr09: 25934098-25942816 Eucalyptus grandis
Eucgr.I01602 5.0kb downstream 5.0kb downstream 5000 false Chr09: 25937817-25942816 Eucalyptus grandis
Eucgr.I01602 10.0kb upstream 10.0kb upstream 13719 true Chr09: 25924098-25937816 Eucalyptus grandis
Eucgr.I01602 10.0kb upstream 10.0kb upstream 10000 false Chr09: 25924098-25934097 Eucalyptus grandis
Eucgr.I01602 10.0kb downstream 10.0kb downstream 13719 true Chr09: 25934098-25947816 Eucalyptus grandis
Eucgr.I01602 10.0kb downstream 10.0kb downstream 10000 false Chr09: 25937817-25947816 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067952 5270 Rosid View MSA
123746563 5271 Pentapetalae View MSA
122790377 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.21187 0.0 5.61266    
cufflinks 1.50264 0.0 4.03965    
cufflinks 1.34084 0.0 3.67001    
cufflinks 1.9926 0.0 5.1519    
cufflinks 0.679092 0.0 2.33434 Low Low
cufflinks 1.99691 0.0 5.27878    

0 Strain