Gene : Eucgr.I01492 E. grandis v2.0
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  1224
Name:  ? Eucgr.I01492 Secondary Identifier:  ? PAC:32065437
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I01492 0.5kb upstream 0.5kb upstream 7525 true Chr09: 25092611-25100135 Eucalyptus grandis
Eucgr.I01492 0.5kb upstream 0.5kb upstream 500 false Chr09: 25092611-25093110 Eucalyptus grandis
Eucgr.I01492 0.5kb downstream 0.5kb downstream 7525 true Chr09: 25093111-25100635 Eucalyptus grandis
Eucgr.I01492 0.5kb downstream 0.5kb downstream 500 false Chr09: 25100136-25100635 Eucalyptus grandis
Eucgr.I01492 1.0kb upstream 1.0kb upstream 8025 true Chr09: 25092111-25100135 Eucalyptus grandis
Eucgr.I01492 1.0kb upstream 1.0kb upstream 1000 false Chr09: 25092111-25093110 Eucalyptus grandis
Eucgr.I01492 1.0kb downstream 1.0kb downstream 8025 true Chr09: 25093111-25101135 Eucalyptus grandis
Eucgr.I01492 1.0kb downstream 1.0kb downstream 1000 false Chr09: 25100136-25101135 Eucalyptus grandis
Eucgr.I01492 2.0kb upstream 2.0kb upstream 9025 true Chr09: 25091111-25100135 Eucalyptus grandis
Eucgr.I01492 2.0kb upstream 2.0kb upstream 2000 false Chr09: 25091111-25093110 Eucalyptus grandis
Eucgr.I01492 2.0kb downstream 2.0kb downstream 9025 true Chr09: 25093111-25102135 Eucalyptus grandis
Eucgr.I01492 2.0kb downstream 2.0kb downstream 2000 false Chr09: 25100136-25102135 Eucalyptus grandis
Eucgr.I01492 5.0kb upstream 5.0kb upstream 12025 true Chr09: 25088111-25100135 Eucalyptus grandis
Eucgr.I01492 5.0kb upstream 5.0kb upstream 5000 false Chr09: 25088111-25093110 Eucalyptus grandis
Eucgr.I01492 5.0kb downstream 5.0kb downstream 12025 true Chr09: 25093111-25105135 Eucalyptus grandis
Eucgr.I01492 5.0kb downstream 5.0kb downstream 5000 false Chr09: 25100136-25105135 Eucalyptus grandis
Eucgr.I01492 10.0kb upstream 10.0kb upstream 17025 true Chr09: 25083111-25100135 Eucalyptus grandis
Eucgr.I01492 10.0kb upstream 10.0kb upstream 10000 false Chr09: 25083111-25093110 Eucalyptus grandis
Eucgr.I01492 10.0kb downstream 10.0kb downstream 17025 true Chr09: 25093111-25110135 Eucalyptus grandis
Eucgr.I01492 10.0kb downstream 10.0kb downstream 10000 false Chr09: 25100136-25110135 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.78315 0.0 13.0532    
cufflinks 1.24557 0.0 3.20033    
cufflinks 2.51966 0.0 6.03666    
cufflinks 0.506068 0.0 1.41506    
cufflinks 0.217415 0.0 0.672479 Low Low
cufflinks 15.2411 0.0 33.7211   High

0 Strain