Gene : Eucgr.I02201 E. grandis v2.0
Defline:  (1 of 8) KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Genomic Order:  1861
Name:  ? Eucgr.I02201 Secondary Identifier:  ? PAC:32063127
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02201 0.5kb upstream 0.5kb upstream 6285 true Chr09: 31946493-31952777 Eucalyptus grandis
Eucgr.I02201 0.5kb upstream 0.5kb upstream 500 false Chr09: 31946493-31946992 Eucalyptus grandis
Eucgr.I02201 0.5kb downstream 0.5kb downstream 6285 true Chr09: 31946993-31953277 Eucalyptus grandis
Eucgr.I02201 0.5kb downstream 0.5kb downstream 500 false Chr09: 31952778-31953277 Eucalyptus grandis
Eucgr.I02201 1.0kb upstream 1.0kb upstream 6785 true Chr09: 31945993-31952777 Eucalyptus grandis
Eucgr.I02201 1.0kb upstream 1.0kb upstream 1000 false Chr09: 31945993-31946992 Eucalyptus grandis
Eucgr.I02201 1.0kb downstream 1.0kb downstream 6785 true Chr09: 31946993-31953777 Eucalyptus grandis
Eucgr.I02201 1.0kb downstream 1.0kb downstream 1000 false Chr09: 31952778-31953777 Eucalyptus grandis
Eucgr.I02201 2.0kb upstream 2.0kb upstream 7785 true Chr09: 31944993-31952777 Eucalyptus grandis
Eucgr.I02201 2.0kb upstream 2.0kb upstream 2000 false Chr09: 31944993-31946992 Eucalyptus grandis
Eucgr.I02201 2.0kb downstream 2.0kb downstream 7785 true Chr09: 31946993-31954777 Eucalyptus grandis
Eucgr.I02201 2.0kb downstream 2.0kb downstream 2000 false Chr09: 31952778-31954777 Eucalyptus grandis
Eucgr.I02201 5.0kb upstream 5.0kb upstream 10785 true Chr09: 31941993-31952777 Eucalyptus grandis
Eucgr.I02201 5.0kb upstream 5.0kb upstream 5000 false Chr09: 31941993-31946992 Eucalyptus grandis
Eucgr.I02201 5.0kb downstream 5.0kb downstream 10785 true Chr09: 31946993-31957777 Eucalyptus grandis
Eucgr.I02201 5.0kb downstream 5.0kb downstream 5000 false Chr09: 31952778-31957777 Eucalyptus grandis
Eucgr.I02201 10.0kb upstream 10.0kb upstream 15785 true Chr09: 31936993-31952777 Eucalyptus grandis
Eucgr.I02201 10.0kb upstream 10.0kb upstream 10000 false Chr09: 31936993-31946992 Eucalyptus grandis
Eucgr.I02201 10.0kb downstream 10.0kb downstream 15785 true Chr09: 31946993-31962777 Eucalyptus grandis
Eucgr.I02201 10.0kb downstream 10.0kb downstream 10000 false Chr09: 31952778-31962777 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065474 5270 Rosid View MSA
123753453 5271 Pentapetalae View MSA
122797686 5272 Eudicot View MSA
122043296 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121350049 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.5022 0.0 38.4589   Low
cufflinks 15.2508 0.0 41.4031    
cufflinks 16.3793 0.0 53.8732    
cufflinks 26.7384 0.0 74.8244    
cufflinks 56.5333 0.0 161.845 High High
cufflinks 16.6335 0.0 42.7361    

0 Strain