Gene : Eucgr.I02086 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1765
Name:  ? Eucgr.I02086 Secondary Identifier:  ? PAC:32063224
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02086 0.5kb upstream 0.5kb upstream 2999 true Chr09: 30575274-30578272 Eucalyptus grandis
Eucgr.I02086 0.5kb upstream 0.5kb upstream 500 false Chr09: 30577773-30578272 Eucalyptus grandis
Eucgr.I02086 0.5kb downstream 0.5kb downstream 2999 true Chr09: 30574774-30577772 Eucalyptus grandis
Eucgr.I02086 0.5kb downstream 0.5kb downstream 500 false Chr09: 30574774-30575273 Eucalyptus grandis
Eucgr.I02086 1.0kb upstream 1.0kb upstream 3499 true Chr09: 30575274-30578772 Eucalyptus grandis
Eucgr.I02086 1.0kb upstream 1.0kb upstream 1000 false Chr09: 30577773-30578772 Eucalyptus grandis
Eucgr.I02086 1.0kb downstream 1.0kb downstream 3499 true Chr09: 30574274-30577772 Eucalyptus grandis
Eucgr.I02086 1.0kb downstream 1.0kb downstream 1000 false Chr09: 30574274-30575273 Eucalyptus grandis
Eucgr.I02086 2.0kb upstream 2.0kb upstream 4499 true Chr09: 30575274-30579772 Eucalyptus grandis
Eucgr.I02086 2.0kb upstream 2.0kb upstream 2000 false Chr09: 30577773-30579772 Eucalyptus grandis
Eucgr.I02086 2.0kb downstream 2.0kb downstream 4499 true Chr09: 30573274-30577772 Eucalyptus grandis
Eucgr.I02086 2.0kb downstream 2.0kb downstream 2000 false Chr09: 30573274-30575273 Eucalyptus grandis
Eucgr.I02086 5.0kb upstream 5.0kb upstream 7499 true Chr09: 30575274-30582772 Eucalyptus grandis
Eucgr.I02086 5.0kb upstream 5.0kb upstream 5000 false Chr09: 30577773-30582772 Eucalyptus grandis
Eucgr.I02086 5.0kb downstream 5.0kb downstream 7499 true Chr09: 30570274-30577772 Eucalyptus grandis
Eucgr.I02086 5.0kb downstream 5.0kb downstream 5000 false Chr09: 30570274-30575273 Eucalyptus grandis
Eucgr.I02086 10.0kb upstream 10.0kb upstream 12499 true Chr09: 30575274-30587772 Eucalyptus grandis
Eucgr.I02086 10.0kb upstream 10.0kb upstream 10000 false Chr09: 30577773-30587772 Eucalyptus grandis
Eucgr.I02086 10.0kb downstream 10.0kb downstream 12499 true Chr09: 30565274-30577772 Eucalyptus grandis
Eucgr.I02086 10.0kb downstream 10.0kb downstream 10000 false Chr09: 30565274-30575273 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063770 5270 Rosid View MSA
123736958 5271 Pentapetalae View MSA
122790433 5272 Eudicot View MSA
122047420 5273 Angiosperm View MSA
121310738 5274 Embryophyte View MSA
123348150 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.23908 0.0 0.771665 Low Low
cufflinks 0.447472 0.0 1.32418 Low  
cufflinks 0.705414 0.0 1.99453    
cufflinks 0.336021 0.0 1.02466 Low  
cufflinks 0.652296 0.0 1.86498 Low  
cufflinks 1.32985 0.0 3.57407   High

0 Strain