Gene : Eucgr.I02728 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2308
Name:  ? Eucgr.I02728 Secondary Identifier:  ? PAC:32065145
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02728 0.5kb upstream 0.5kb upstream 2057 true Chr09: 38157157-38159213 Eucalyptus grandis
Eucgr.I02728 0.5kb upstream 0.5kb upstream 500 false Chr09: 38157157-38157656 Eucalyptus grandis
Eucgr.I02728 0.5kb downstream 0.5kb downstream 2057 true Chr09: 38157657-38159713 Eucalyptus grandis
Eucgr.I02728 0.5kb downstream 0.5kb downstream 500 false Chr09: 38159214-38159713 Eucalyptus grandis
Eucgr.I02728 1.0kb upstream 1.0kb upstream 2557 true Chr09: 38156657-38159213 Eucalyptus grandis
Eucgr.I02728 1.0kb upstream 1.0kb upstream 1000 false Chr09: 38156657-38157656 Eucalyptus grandis
Eucgr.I02728 1.0kb downstream 1.0kb downstream 2557 true Chr09: 38157657-38160213 Eucalyptus grandis
Eucgr.I02728 1.0kb downstream 1.0kb downstream 1000 false Chr09: 38159214-38160213 Eucalyptus grandis
Eucgr.I02728 2.0kb upstream 2.0kb upstream 3557 true Chr09: 38155657-38159213 Eucalyptus grandis
Eucgr.I02728 2.0kb upstream 2.0kb upstream 2000 false Chr09: 38155657-38157656 Eucalyptus grandis
Eucgr.I02728 2.0kb downstream 2.0kb downstream 3557 true Chr09: 38157657-38161213 Eucalyptus grandis
Eucgr.I02728 2.0kb downstream 2.0kb downstream 2000 false Chr09: 38159214-38161213 Eucalyptus grandis
Eucgr.I02728 5.0kb upstream 5.0kb upstream 6557 true Chr09: 38152657-38159213 Eucalyptus grandis
Eucgr.I02728 5.0kb upstream 5.0kb upstream 5000 false Chr09: 38152657-38157656 Eucalyptus grandis
Eucgr.I02728 5.0kb downstream 5.0kb downstream 6557 true Chr09: 38157657-38164213 Eucalyptus grandis
Eucgr.I02728 5.0kb downstream 5.0kb downstream 5000 false Chr09: 38159214-38164213 Eucalyptus grandis
Eucgr.I02728 10.0kb upstream 10.0kb upstream 11557 true Chr09: 38147657-38159213 Eucalyptus grandis
Eucgr.I02728 10.0kb upstream 10.0kb upstream 10000 false Chr09: 38147657-38157656 Eucalyptus grandis
Eucgr.I02728 10.0kb downstream 10.0kb downstream 11557 true Chr09: 38157657-38169213 Eucalyptus grandis
Eucgr.I02728 10.0kb downstream 10.0kb downstream 10000 false Chr09: 38159214-38169213 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.875879 0.0 2.55347    
cufflinks 0.719614 0.0 2.12952 Low Low
cufflinks 1.30618 0.0 3.63774    
cufflinks 1.63306 0.0 4.42601   High
cufflinks 1.51218 0.0 4.14677    
cufflinks 0.808654 0.0 2.39085 Low  

0 Strain