Gene : Eucgr.I02619 E. grandis v2.0
Defline:  (1 of 1) PTHR12746 - NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 Genomic Order:  2210
Name:  ? Eucgr.I02619 Secondary Identifier:  ? PAC:32064927
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02619 0.5kb upstream 0.5kb upstream 2877 true Chr09: 37393720-37396596 Eucalyptus grandis
Eucgr.I02619 0.5kb upstream 0.5kb upstream 500 false Chr09: 37393720-37394219 Eucalyptus grandis
Eucgr.I02619 0.5kb downstream 0.5kb downstream 2877 true Chr09: 37394220-37397096 Eucalyptus grandis
Eucgr.I02619 0.5kb downstream 0.5kb downstream 500 false Chr09: 37396597-37397096 Eucalyptus grandis
Eucgr.I02619 1.0kb upstream 1.0kb upstream 3377 true Chr09: 37393220-37396596 Eucalyptus grandis
Eucgr.I02619 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37393220-37394219 Eucalyptus grandis
Eucgr.I02619 1.0kb downstream 1.0kb downstream 3377 true Chr09: 37394220-37397596 Eucalyptus grandis
Eucgr.I02619 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37396597-37397596 Eucalyptus grandis
Eucgr.I02619 2.0kb upstream 2.0kb upstream 4377 true Chr09: 37392220-37396596 Eucalyptus grandis
Eucgr.I02619 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37392220-37394219 Eucalyptus grandis
Eucgr.I02619 2.0kb downstream 2.0kb downstream 4377 true Chr09: 37394220-37398596 Eucalyptus grandis
Eucgr.I02619 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37396597-37398596 Eucalyptus grandis
Eucgr.I02619 5.0kb upstream 5.0kb upstream 7377 true Chr09: 37389220-37396596 Eucalyptus grandis
Eucgr.I02619 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37389220-37394219 Eucalyptus grandis
Eucgr.I02619 5.0kb downstream 5.0kb downstream 7377 true Chr09: 37394220-37401596 Eucalyptus grandis
Eucgr.I02619 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37396597-37401596 Eucalyptus grandis
Eucgr.I02619 10.0kb upstream 10.0kb upstream 12377 true Chr09: 37384220-37396596 Eucalyptus grandis
Eucgr.I02619 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37384220-37394219 Eucalyptus grandis
Eucgr.I02619 10.0kb downstream 10.0kb downstream 12377 true Chr09: 37394220-37406596 Eucalyptus grandis
Eucgr.I02619 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37396597-37406596 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041150 5273 Angiosperm View MSA
124068497 5270 Rosid View MSA
123740030 5271 Pentapetalae View MSA
122786689 5272 Eudicot View MSA
121346999 5274 Embryophyte View MSA
123425713 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.6744 0.0 46.0603   High
cufflinks 18.2977 0.0 40.8389    
cufflinks 5.25884 0.0 12.7669   Low
cufflinks 11.6261 0.0 26.4945    
cufflinks 13.0642 0.0 29.4922    
cufflinks 8.68819 0.0 20.2411    

0 Strain