Gene : Eucgr.I02505 E. grandis v2.0
Defline:  (1 of 1) PTHR22594:SF5 - ASPARTATE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  2124
Name:  ? Eucgr.I02505 Secondary Identifier:  ? PAC:32063742
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02505 0.5kb upstream 0.5kb upstream 9922 true Chr09: 36007566-36017487 Eucalyptus grandis
Eucgr.I02505 0.5kb upstream 0.5kb upstream 500 false Chr09: 36007566-36008065 Eucalyptus grandis
Eucgr.I02505 0.5kb downstream 0.5kb downstream 9922 true Chr09: 36008066-36017987 Eucalyptus grandis
Eucgr.I02505 0.5kb downstream 0.5kb downstream 500 false Chr09: 36017488-36017987 Eucalyptus grandis
Eucgr.I02505 1.0kb upstream 1.0kb upstream 10422 true Chr09: 36007066-36017487 Eucalyptus grandis
Eucgr.I02505 1.0kb upstream 1.0kb upstream 1000 false Chr09: 36007066-36008065 Eucalyptus grandis
Eucgr.I02505 1.0kb downstream 1.0kb downstream 10422 true Chr09: 36008066-36018487 Eucalyptus grandis
Eucgr.I02505 1.0kb downstream 1.0kb downstream 1000 false Chr09: 36017488-36018487 Eucalyptus grandis
Eucgr.I02505 2.0kb upstream 2.0kb upstream 11422 true Chr09: 36006066-36017487 Eucalyptus grandis
Eucgr.I02505 2.0kb upstream 2.0kb upstream 2000 false Chr09: 36006066-36008065 Eucalyptus grandis
Eucgr.I02505 2.0kb downstream 2.0kb downstream 11422 true Chr09: 36008066-36019487 Eucalyptus grandis
Eucgr.I02505 2.0kb downstream 2.0kb downstream 2000 false Chr09: 36017488-36019487 Eucalyptus grandis
Eucgr.I02505 5.0kb upstream 5.0kb upstream 14422 true Chr09: 36003066-36017487 Eucalyptus grandis
Eucgr.I02505 5.0kb upstream 5.0kb upstream 5000 false Chr09: 36003066-36008065 Eucalyptus grandis
Eucgr.I02505 5.0kb downstream 5.0kb downstream 14422 true Chr09: 36008066-36022487 Eucalyptus grandis
Eucgr.I02505 5.0kb downstream 5.0kb downstream 5000 false Chr09: 36017488-36022487 Eucalyptus grandis
Eucgr.I02505 10.0kb upstream 10.0kb upstream 19422 true Chr09: 35998066-36017487 Eucalyptus grandis
Eucgr.I02505 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35998066-36008065 Eucalyptus grandis
Eucgr.I02505 10.0kb downstream 10.0kb downstream 19422 true Chr09: 36008066-36027487 Eucalyptus grandis
Eucgr.I02505 10.0kb downstream 10.0kb downstream 10000 false Chr09: 36017488-36027487 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.78116 0.0 17.9146    
cufflinks 5.82703 0.0 13.6821    
cufflinks 8.16144 0.0 18.6913    
cufflinks 6.09095 0.0 14.2257    
cufflinks 4.33405 0.0 10.493   Low
cufflinks 15.1189 0.0 33.6623   High

0 Strain