Gene : Eucgr.J00322 E. grandis v2.0
Defline:  (1 of 1) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE Genomic Order:  280
Name:  ? Eucgr.J00322 Secondary Identifier:  ? PAC:32034230
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5129 Eucalyptus grandis pathologic  
Egrandis PWY-6483 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00322 0.5kb upstream 0.5kb upstream 7866 true Chr10: 3231794-3239659 Eucalyptus grandis
Eucgr.J00322 0.5kb upstream 0.5kb upstream 500 false Chr10: 3231794-3232293 Eucalyptus grandis
Eucgr.J00322 0.5kb downstream 0.5kb downstream 7866 true Chr10: 3232294-3240159 Eucalyptus grandis
Eucgr.J00322 0.5kb downstream 0.5kb downstream 500 false Chr10: 3239660-3240159 Eucalyptus grandis
Eucgr.J00322 1.0kb upstream 1.0kb upstream 8366 true Chr10: 3231294-3239659 Eucalyptus grandis
Eucgr.J00322 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3231294-3232293 Eucalyptus grandis
Eucgr.J00322 1.0kb downstream 1.0kb downstream 8366 true Chr10: 3232294-3240659 Eucalyptus grandis
Eucgr.J00322 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3239660-3240659 Eucalyptus grandis
Eucgr.J00322 2.0kb upstream 2.0kb upstream 9366 true Chr10: 3230294-3239659 Eucalyptus grandis
Eucgr.J00322 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3230294-3232293 Eucalyptus grandis
Eucgr.J00322 2.0kb downstream 2.0kb downstream 9366 true Chr10: 3232294-3241659 Eucalyptus grandis
Eucgr.J00322 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3239660-3241659 Eucalyptus grandis
Eucgr.J00322 5.0kb upstream 5.0kb upstream 12366 true Chr10: 3227294-3239659 Eucalyptus grandis
Eucgr.J00322 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3227294-3232293 Eucalyptus grandis
Eucgr.J00322 5.0kb downstream 5.0kb downstream 12366 true Chr10: 3232294-3244659 Eucalyptus grandis
Eucgr.J00322 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3239660-3244659 Eucalyptus grandis
Eucgr.J00322 10.0kb upstream 10.0kb upstream 17366 true Chr10: 3222294-3239659 Eucalyptus grandis
Eucgr.J00322 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3222294-3232293 Eucalyptus grandis
Eucgr.J00322 10.0kb downstream 10.0kb downstream 17366 true Chr10: 3232294-3249659 Eucalyptus grandis
Eucgr.J00322 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3239660-3249659 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074924 5270 Rosid View MSA
123752126 5271 Pentapetalae View MSA
122793643 5272 Eudicot View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.169 0.0 35.7657    
cufflinks 17.9121 0.0 39.6688    
cufflinks 13.0991 0.0 28.9771    
cufflinks 21.4607 0.0 47.7205    
cufflinks 8.04946 0.0 17.9993   Low
cufflinks 23.4917 0.0 52.2856   High

0 Strain