Gene : Eucgr.J00263 E. grandis v2.0
Defline:  (1 of 5) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  230
Name:  ? Eucgr.J00263 Secondary Identifier:  ? PAC:32032853
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00263 0.5kb upstream 0.5kb upstream 6373 true Chr10: 2709692-2716064 Eucalyptus grandis
Eucgr.J00263 0.5kb upstream 0.5kb upstream 500 false Chr10: 2715565-2716064 Eucalyptus grandis
Eucgr.J00263 0.5kb downstream 0.5kb downstream 6373 true Chr10: 2709192-2715564 Eucalyptus grandis
Eucgr.J00263 0.5kb downstream 0.5kb downstream 500 false Chr10: 2709192-2709691 Eucalyptus grandis
Eucgr.J00263 1.0kb upstream 1.0kb upstream 6873 true Chr10: 2709692-2716564 Eucalyptus grandis
Eucgr.J00263 1.0kb upstream 1.0kb upstream 1000 false Chr10: 2715565-2716564 Eucalyptus grandis
Eucgr.J00263 1.0kb downstream 1.0kb downstream 6873 true Chr10: 2708692-2715564 Eucalyptus grandis
Eucgr.J00263 1.0kb downstream 1.0kb downstream 1000 false Chr10: 2708692-2709691 Eucalyptus grandis
Eucgr.J00263 2.0kb upstream 2.0kb upstream 7873 true Chr10: 2709692-2717564 Eucalyptus grandis
Eucgr.J00263 2.0kb upstream 2.0kb upstream 2000 false Chr10: 2715565-2717564 Eucalyptus grandis
Eucgr.J00263 2.0kb downstream 2.0kb downstream 7873 true Chr10: 2707692-2715564 Eucalyptus grandis
Eucgr.J00263 2.0kb downstream 2.0kb downstream 2000 false Chr10: 2707692-2709691 Eucalyptus grandis
Eucgr.J00263 5.0kb upstream 5.0kb upstream 10873 true Chr10: 2709692-2720564 Eucalyptus grandis
Eucgr.J00263 5.0kb upstream 5.0kb upstream 5000 false Chr10: 2715565-2720564 Eucalyptus grandis
Eucgr.J00263 5.0kb downstream 5.0kb downstream 10873 true Chr10: 2704692-2715564 Eucalyptus grandis
Eucgr.J00263 5.0kb downstream 5.0kb downstream 5000 false Chr10: 2704692-2709691 Eucalyptus grandis
Eucgr.J00263 10.0kb upstream 10.0kb upstream 15873 true Chr10: 2709692-2725564 Eucalyptus grandis
Eucgr.J00263 10.0kb upstream 10.0kb upstream 10000 false Chr10: 2715565-2725564 Eucalyptus grandis
Eucgr.J00263 10.0kb downstream 10.0kb downstream 15873 true Chr10: 2699692-2715564 Eucalyptus grandis
Eucgr.J00263 10.0kb downstream 10.0kb downstream 10000 false Chr10: 2699692-2709691 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.2098 0.0 41.2313    
cufflinks 95.8886 0.0 268.102 High High
cufflinks 14.0412 0.0 39.1926    
cufflinks 102.42 0.0 286.208 High High
cufflinks 9.16541 0.0 24.4077    
cufflinks 15.3329 0.0 34.508    

0 Strain