Gene : Eucgr.J01004 E. grandis v2.0
Defline:  (1 of 2) PTHR12780 - RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED Genomic Order:  886
Name:  ? Eucgr.J01004 Secondary Identifier:  ? PAC:32034992
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01004 0.5kb upstream 0.5kb upstream 4301 true Chr10: 10855707-10860007 Eucalyptus grandis
Eucgr.J01004 0.5kb upstream 0.5kb upstream 500 false Chr10: 10855707-10856206 Eucalyptus grandis
Eucgr.J01004 0.5kb downstream 0.5kb downstream 4301 true Chr10: 10856207-10860507 Eucalyptus grandis
Eucgr.J01004 0.5kb downstream 0.5kb downstream 500 false Chr10: 10860008-10860507 Eucalyptus grandis
Eucgr.J01004 1.0kb upstream 1.0kb upstream 4801 true Chr10: 10855207-10860007 Eucalyptus grandis
Eucgr.J01004 1.0kb upstream 1.0kb upstream 1000 false Chr10: 10855207-10856206 Eucalyptus grandis
Eucgr.J01004 1.0kb downstream 1.0kb downstream 4801 true Chr10: 10856207-10861007 Eucalyptus grandis
Eucgr.J01004 1.0kb downstream 1.0kb downstream 1000 false Chr10: 10860008-10861007 Eucalyptus grandis
Eucgr.J01004 2.0kb upstream 2.0kb upstream 5801 true Chr10: 10854207-10860007 Eucalyptus grandis
Eucgr.J01004 2.0kb upstream 2.0kb upstream 2000 false Chr10: 10854207-10856206 Eucalyptus grandis
Eucgr.J01004 2.0kb downstream 2.0kb downstream 5801 true Chr10: 10856207-10862007 Eucalyptus grandis
Eucgr.J01004 2.0kb downstream 2.0kb downstream 2000 false Chr10: 10860008-10862007 Eucalyptus grandis
Eucgr.J01004 5.0kb upstream 5.0kb upstream 8801 true Chr10: 10851207-10860007 Eucalyptus grandis
Eucgr.J01004 5.0kb upstream 5.0kb upstream 5000 false Chr10: 10851207-10856206 Eucalyptus grandis
Eucgr.J01004 5.0kb downstream 5.0kb downstream 8801 true Chr10: 10856207-10865007 Eucalyptus grandis
Eucgr.J01004 5.0kb downstream 5.0kb downstream 5000 false Chr10: 10860008-10865007 Eucalyptus grandis
Eucgr.J01004 10.0kb upstream 10.0kb upstream 13801 true Chr10: 10846207-10860007 Eucalyptus grandis
Eucgr.J01004 10.0kb upstream 10.0kb upstream 10000 false Chr10: 10846207-10856206 Eucalyptus grandis
Eucgr.J01004 10.0kb downstream 10.0kb downstream 13801 true Chr10: 10856207-10870007 Eucalyptus grandis
Eucgr.J01004 10.0kb downstream 10.0kb downstream 10000 false Chr10: 10860008-10870007 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066352 5270 Rosid View MSA
123744384 5271 Pentapetalae View MSA
122788690 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.57199 0.0 18.7633    
cufflinks 1.96468 0.0 6.07099   Low
cufflinks 8.11943 0.0 20.2939    
cufflinks 3.27284 0.0 9.3259    
cufflinks 3.60629 0.0 10.1523    
cufflinks 8.58032 0.0 21.047   High

0 Strain