Gene : Eucgr.J00958 E. grandis v2.0
Defline:  (1 of 1) PTHR21022:SF1 - AROGENATE DEHYDRATASE/PREPHENATE DEHYDRATASE 2, CHLOROPLASTIC Genomic Order:  847
Name:  ? Eucgr.J00958 Secondary Identifier:  ? PAC:32033661
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-3462 Eucalyptus grandis pathologic  
Egrandis PWY-3481 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00958 0.5kb upstream 0.5kb upstream 4451 true Chr10: 10411921-10416371 Eucalyptus grandis
Eucgr.J00958 0.5kb upstream 0.5kb upstream 500 false Chr10: 10411921-10412420 Eucalyptus grandis
Eucgr.J00958 0.5kb downstream 0.5kb downstream 4451 true Chr10: 10412421-10416871 Eucalyptus grandis
Eucgr.J00958 0.5kb downstream 0.5kb downstream 500 false Chr10: 10416372-10416871 Eucalyptus grandis
Eucgr.J00958 1.0kb upstream 1.0kb upstream 4951 true Chr10: 10411421-10416371 Eucalyptus grandis
Eucgr.J00958 1.0kb upstream 1.0kb upstream 1000 false Chr10: 10411421-10412420 Eucalyptus grandis
Eucgr.J00958 1.0kb downstream 1.0kb downstream 4951 true Chr10: 10412421-10417371 Eucalyptus grandis
Eucgr.J00958 1.0kb downstream 1.0kb downstream 1000 false Chr10: 10416372-10417371 Eucalyptus grandis
Eucgr.J00958 2.0kb upstream 2.0kb upstream 5951 true Chr10: 10410421-10416371 Eucalyptus grandis
Eucgr.J00958 2.0kb upstream 2.0kb upstream 2000 false Chr10: 10410421-10412420 Eucalyptus grandis
Eucgr.J00958 2.0kb downstream 2.0kb downstream 5951 true Chr10: 10412421-10418371 Eucalyptus grandis
Eucgr.J00958 2.0kb downstream 2.0kb downstream 2000 false Chr10: 10416372-10418371 Eucalyptus grandis
Eucgr.J00958 5.0kb upstream 5.0kb upstream 8951 true Chr10: 10407421-10416371 Eucalyptus grandis
Eucgr.J00958 5.0kb upstream 5.0kb upstream 5000 false Chr10: 10407421-10412420 Eucalyptus grandis
Eucgr.J00958 5.0kb downstream 5.0kb downstream 8951 true Chr10: 10412421-10421371 Eucalyptus grandis
Eucgr.J00958 5.0kb downstream 5.0kb downstream 5000 false Chr10: 10416372-10421371 Eucalyptus grandis
Eucgr.J00958 10.0kb upstream 10.0kb upstream 13951 true Chr10: 10402421-10416371 Eucalyptus grandis
Eucgr.J00958 10.0kb upstream 10.0kb upstream 10000 false Chr10: 10402421-10412420 Eucalyptus grandis
Eucgr.J00958 10.0kb downstream 10.0kb downstream 13951 true Chr10: 10412421-10426371 Eucalyptus grandis
Eucgr.J00958 10.0kb downstream 10.0kb downstream 10000 false Chr10: 10416372-10426371 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040982 5273 Angiosperm View MSA
124068045 5270 Rosid View MSA
123737852 5271 Pentapetalae View MSA
122798804 5272 Eudicot View MSA
121351398 5274 Embryophyte View MSA
123427097 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6834 0.0 39.5065    
cufflinks 18.2855 0.0 48.721    
cufflinks 22.085 0.0 56.9039    
cufflinks 38.543 0.0 97.3436 High High
cufflinks 27.2172 0.0 77.7182    
cufflinks 14.8644 0.0 35.8349   Low

0 Strain