Gene : Eucgr.J00959 E. grandis v2.0
Defline:  (1 of 1) PTHR12606:SF15 - NEDD8-SPECIFIC PROTEASE 1 Genomic Order:  848
Name:  ? Eucgr.J00959 Secondary Identifier:  ? PAC:32035061
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00959 0.5kb upstream 0.5kb upstream 3475 true Chr10: 10416597-10420071 Eucalyptus grandis
Eucgr.J00959 0.5kb upstream 0.5kb upstream 500 false Chr10: 10419572-10420071 Eucalyptus grandis
Eucgr.J00959 0.5kb downstream 0.5kb downstream 3475 true Chr10: 10416097-10419571 Eucalyptus grandis
Eucgr.J00959 0.5kb downstream 0.5kb downstream 500 false Chr10: 10416097-10416596 Eucalyptus grandis
Eucgr.J00959 1.0kb upstream 1.0kb upstream 3975 true Chr10: 10416597-10420571 Eucalyptus grandis
Eucgr.J00959 1.0kb upstream 1.0kb upstream 1000 false Chr10: 10419572-10420571 Eucalyptus grandis
Eucgr.J00959 1.0kb downstream 1.0kb downstream 3975 true Chr10: 10415597-10419571 Eucalyptus grandis
Eucgr.J00959 1.0kb downstream 1.0kb downstream 1000 false Chr10: 10415597-10416596 Eucalyptus grandis
Eucgr.J00959 2.0kb upstream 2.0kb upstream 4975 true Chr10: 10416597-10421571 Eucalyptus grandis
Eucgr.J00959 2.0kb upstream 2.0kb upstream 2000 false Chr10: 10419572-10421571 Eucalyptus grandis
Eucgr.J00959 2.0kb downstream 2.0kb downstream 4975 true Chr10: 10414597-10419571 Eucalyptus grandis
Eucgr.J00959 2.0kb downstream 2.0kb downstream 2000 false Chr10: 10414597-10416596 Eucalyptus grandis
Eucgr.J00959 5.0kb upstream 5.0kb upstream 7975 true Chr10: 10416597-10424571 Eucalyptus grandis
Eucgr.J00959 5.0kb upstream 5.0kb upstream 5000 false Chr10: 10419572-10424571 Eucalyptus grandis
Eucgr.J00959 5.0kb downstream 5.0kb downstream 7975 true Chr10: 10411597-10419571 Eucalyptus grandis
Eucgr.J00959 5.0kb downstream 5.0kb downstream 5000 false Chr10: 10411597-10416596 Eucalyptus grandis
Eucgr.J00959 10.0kb upstream 10.0kb upstream 12975 true Chr10: 10416597-10429571 Eucalyptus grandis
Eucgr.J00959 10.0kb upstream 10.0kb upstream 10000 false Chr10: 10419572-10429571 Eucalyptus grandis
Eucgr.J00959 10.0kb downstream 10.0kb downstream 12975 true Chr10: 10406597-10419571 Eucalyptus grandis
Eucgr.J00959 10.0kb downstream 10.0kb downstream 10000 false Chr10: 10406597-10416596 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065120 5270 Rosid View MSA
123744954 5271 Pentapetalae View MSA
122791121 5272 Eudicot View MSA
122044999 5273 Angiosperm View MSA
121348987 5274 Embryophyte View MSA
123428480 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.05008 0.0 20.2592    
cufflinks 5.86277 0.0 14.2392    
cufflinks 6.5899 0.0 20.7019    
cufflinks 9.23644 0.0 23.9669   High
cufflinks 5.56411 0.0 16.4947    
cufflinks 5.58463 0.0 14.0781    

0 Strain