Gene : Eucgr.J00729 E. grandis v2.0
Defline:  (1 of 1) PTHR10338:SF126 - MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC Genomic Order:  638
Name:  ? Eucgr.J00729 Secondary Identifier:  ? PAC:32035401
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CHLOROPHYLL-SYN Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J00729 0.5kb upstream 0.5kb upstream 9950 true Chr10: 7743947-7753896 Eucalyptus grandis
Eucgr.J00729 0.5kb upstream 0.5kb upstream 500 false Chr10: 7743947-7744446 Eucalyptus grandis
Eucgr.J00729 0.5kb downstream 0.5kb downstream 9950 true Chr10: 7744447-7754396 Eucalyptus grandis
Eucgr.J00729 0.5kb downstream 0.5kb downstream 500 false Chr10: 7753897-7754396 Eucalyptus grandis
Eucgr.J00729 1.0kb upstream 1.0kb upstream 10450 true Chr10: 7743447-7753896 Eucalyptus grandis
Eucgr.J00729 1.0kb upstream 1.0kb upstream 1000 false Chr10: 7743447-7744446 Eucalyptus grandis
Eucgr.J00729 1.0kb downstream 1.0kb downstream 10450 true Chr10: 7744447-7754896 Eucalyptus grandis
Eucgr.J00729 1.0kb downstream 1.0kb downstream 1000 false Chr10: 7753897-7754896 Eucalyptus grandis
Eucgr.J00729 2.0kb upstream 2.0kb upstream 11450 true Chr10: 7742447-7753896 Eucalyptus grandis
Eucgr.J00729 2.0kb upstream 2.0kb upstream 2000 false Chr10: 7742447-7744446 Eucalyptus grandis
Eucgr.J00729 2.0kb downstream 2.0kb downstream 11450 true Chr10: 7744447-7755896 Eucalyptus grandis
Eucgr.J00729 2.0kb downstream 2.0kb downstream 2000 false Chr10: 7753897-7755896 Eucalyptus grandis
Eucgr.J00729 5.0kb upstream 5.0kb upstream 14450 true Chr10: 7739447-7753896 Eucalyptus grandis
Eucgr.J00729 5.0kb upstream 5.0kb upstream 5000 false Chr10: 7739447-7744446 Eucalyptus grandis
Eucgr.J00729 5.0kb downstream 5.0kb downstream 14450 true Chr10: 7744447-7758896 Eucalyptus grandis
Eucgr.J00729 5.0kb downstream 5.0kb downstream 5000 false Chr10: 7753897-7758896 Eucalyptus grandis
Eucgr.J00729 10.0kb upstream 10.0kb upstream 19450 true Chr10: 7734447-7753896 Eucalyptus grandis
Eucgr.J00729 10.0kb upstream 10.0kb upstream 10000 false Chr10: 7734447-7744446 Eucalyptus grandis
Eucgr.J00729 10.0kb downstream 10.0kb downstream 19450 true Chr10: 7744447-7763896 Eucalyptus grandis
Eucgr.J00729 10.0kb downstream 10.0kb downstream 10000 false Chr10: 7753897-7763896 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
124050211 5270 Rosid View MSA
123740767 5271 Pentapetalae View MSA
122793676 5272 Eudicot View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.8823 0.0 38.1617    
cufflinks 3.97881 0.0 9.31166    
cufflinks 8.47298 0.0 22.2481    
cufflinks 1.19841 0.0 3.32699   Low
cufflinks 3.49792 0.0 8.30219    
cufflinks 25.8485 0.0 59.7226   High

0 Strain