Gene : Eucgr.J01427 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1207
Name:  ? Eucgr.J01427 Secondary Identifier:  ? PAC:32035717
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01427 0.5kb upstream 0.5kb upstream 2594 true Chr10: 17016444-17019037 Eucalyptus grandis
Eucgr.J01427 0.5kb upstream 0.5kb upstream 500 false Chr10: 17016444-17016943 Eucalyptus grandis
Eucgr.J01427 0.5kb downstream 0.5kb downstream 2594 true Chr10: 17016944-17019537 Eucalyptus grandis
Eucgr.J01427 0.5kb downstream 0.5kb downstream 500 false Chr10: 17019038-17019537 Eucalyptus grandis
Eucgr.J01427 1.0kb upstream 1.0kb upstream 3094 true Chr10: 17015944-17019037 Eucalyptus grandis
Eucgr.J01427 1.0kb upstream 1.0kb upstream 1000 false Chr10: 17015944-17016943 Eucalyptus grandis
Eucgr.J01427 1.0kb downstream 1.0kb downstream 3094 true Chr10: 17016944-17020037 Eucalyptus grandis
Eucgr.J01427 1.0kb downstream 1.0kb downstream 1000 false Chr10: 17019038-17020037 Eucalyptus grandis
Eucgr.J01427 2.0kb upstream 2.0kb upstream 4094 true Chr10: 17014944-17019037 Eucalyptus grandis
Eucgr.J01427 2.0kb upstream 2.0kb upstream 2000 false Chr10: 17014944-17016943 Eucalyptus grandis
Eucgr.J01427 2.0kb downstream 2.0kb downstream 4094 true Chr10: 17016944-17021037 Eucalyptus grandis
Eucgr.J01427 2.0kb downstream 2.0kb downstream 2000 false Chr10: 17019038-17021037 Eucalyptus grandis
Eucgr.J01427 5.0kb upstream 5.0kb upstream 7094 true Chr10: 17011944-17019037 Eucalyptus grandis
Eucgr.J01427 5.0kb upstream 5.0kb upstream 5000 false Chr10: 17011944-17016943 Eucalyptus grandis
Eucgr.J01427 5.0kb downstream 5.0kb downstream 7094 true Chr10: 17016944-17024037 Eucalyptus grandis
Eucgr.J01427 5.0kb downstream 5.0kb downstream 5000 false Chr10: 17019038-17024037 Eucalyptus grandis
Eucgr.J01427 10.0kb upstream 10.0kb upstream 12094 true Chr10: 17006944-17019037 Eucalyptus grandis
Eucgr.J01427 10.0kb upstream 10.0kb upstream 10000 false Chr10: 17006944-17016943 Eucalyptus grandis
Eucgr.J01427 10.0kb downstream 10.0kb downstream 12094 true Chr10: 17016944-17029037 Eucalyptus grandis
Eucgr.J01427 10.0kb downstream 10.0kb downstream 10000 false Chr10: 17019038-17029037 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068109 5270 Rosid View MSA
123738299 5271 Pentapetalae View MSA
122788769 5272 Eudicot View MSA
122047238 5273 Angiosperm View MSA
121310712 5274 Embryophyte View MSA
123348130 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.553141 0.0 1.72085   Low
cufflinks 0.748261 0.0 2.2143 Low  
cufflinks 0.759583 0.0 2.25753    
cufflinks 0.803275 0.0 2.35681    
cufflinks 0.821104 0.0 2.42229    
cufflinks 1.4113 0.0 3.99363   High

0 Strain