Gene : Eucgr.J01409 E. grandis v2.0
Defline:  (1 of 1) PTHR12856 - TRANSCRIPTION INITIATION FACTOR IIH-RELATED Genomic Order:  1192
Name:  ? Eucgr.J01409 Secondary Identifier:  ? PAC:32034613
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01409 0.5kb upstream 0.5kb upstream 9615 true Chr10: 16798329-16807943 Eucalyptus grandis
Eucgr.J01409 0.5kb upstream 0.5kb upstream 500 false Chr10: 16807444-16807943 Eucalyptus grandis
Eucgr.J01409 0.5kb downstream 0.5kb downstream 9615 true Chr10: 16797829-16807443 Eucalyptus grandis
Eucgr.J01409 0.5kb downstream 0.5kb downstream 500 false Chr10: 16797829-16798328 Eucalyptus grandis
Eucgr.J01409 1.0kb upstream 1.0kb upstream 10115 true Chr10: 16798329-16808443 Eucalyptus grandis
Eucgr.J01409 1.0kb upstream 1.0kb upstream 1000 false Chr10: 16807444-16808443 Eucalyptus grandis
Eucgr.J01409 1.0kb downstream 1.0kb downstream 10115 true Chr10: 16797329-16807443 Eucalyptus grandis
Eucgr.J01409 1.0kb downstream 1.0kb downstream 1000 false Chr10: 16797329-16798328 Eucalyptus grandis
Eucgr.J01409 2.0kb upstream 2.0kb upstream 11115 true Chr10: 16798329-16809443 Eucalyptus grandis
Eucgr.J01409 2.0kb upstream 2.0kb upstream 2000 false Chr10: 16807444-16809443 Eucalyptus grandis
Eucgr.J01409 2.0kb downstream 2.0kb downstream 11115 true Chr10: 16796329-16807443 Eucalyptus grandis
Eucgr.J01409 2.0kb downstream 2.0kb downstream 2000 false Chr10: 16796329-16798328 Eucalyptus grandis
Eucgr.J01409 5.0kb upstream 5.0kb upstream 14115 true Chr10: 16798329-16812443 Eucalyptus grandis
Eucgr.J01409 5.0kb upstream 5.0kb upstream 5000 false Chr10: 16807444-16812443 Eucalyptus grandis
Eucgr.J01409 5.0kb downstream 5.0kb downstream 14115 true Chr10: 16793329-16807443 Eucalyptus grandis
Eucgr.J01409 5.0kb downstream 5.0kb downstream 5000 false Chr10: 16793329-16798328 Eucalyptus grandis
Eucgr.J01409 10.0kb upstream 10.0kb upstream 19115 true Chr10: 16798329-16817443 Eucalyptus grandis
Eucgr.J01409 10.0kb upstream 10.0kb upstream 10000 false Chr10: 16807444-16817443 Eucalyptus grandis
Eucgr.J01409 10.0kb downstream 10.0kb downstream 19115 true Chr10: 16788329-16807443 Eucalyptus grandis
Eucgr.J01409 10.0kb downstream 10.0kb downstream 10000 false Chr10: 16788329-16798328 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068692 5270 Rosid View MSA
123738244 5271 Pentapetalae View MSA
122787782 5272 Eudicot View MSA
122047682 5273 Angiosperm View MSA
121347472 5274 Embryophyte View MSA
123425427 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.64022 0.0 22.0545   Low
cufflinks 17.3862 0.0 44.3291    
cufflinks 9.96481 0.0 22.7321   Low
cufflinks 16.5675 0.0 37.1203    
cufflinks 18.6355 0.0 48.9777   High
cufflinks 13.1878 0.0 33.7987    

0 Strain