Gene : Eucgr.J01374 E. grandis v2.0
Defline:  (1 of 1) PTHR11468:SF8 - ALPHA-GLUCAN PHOSPHORYLASE 1 Genomic Order:  1161
Name:  ? Eucgr.J01374 Secondary Identifier:  ? PAC:32034929
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7238 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01374 0.5kb upstream 0.5kb upstream 12840 true Chr10: 16165782-16178621 Eucalyptus grandis
Eucgr.J01374 0.5kb upstream 0.5kb upstream 500 false Chr10: 16178122-16178621 Eucalyptus grandis
Eucgr.J01374 0.5kb downstream 0.5kb downstream 12840 true Chr10: 16165282-16178121 Eucalyptus grandis
Eucgr.J01374 0.5kb downstream 0.5kb downstream 500 false Chr10: 16165282-16165781 Eucalyptus grandis
Eucgr.J01374 1.0kb upstream 1.0kb upstream 13340 true Chr10: 16165782-16179121 Eucalyptus grandis
Eucgr.J01374 1.0kb upstream 1.0kb upstream 1000 false Chr10: 16178122-16179121 Eucalyptus grandis
Eucgr.J01374 1.0kb downstream 1.0kb downstream 13340 true Chr10: 16164782-16178121 Eucalyptus grandis
Eucgr.J01374 1.0kb downstream 1.0kb downstream 1000 false Chr10: 16164782-16165781 Eucalyptus grandis
Eucgr.J01374 2.0kb upstream 2.0kb upstream 14340 true Chr10: 16165782-16180121 Eucalyptus grandis
Eucgr.J01374 2.0kb upstream 2.0kb upstream 2000 false Chr10: 16178122-16180121 Eucalyptus grandis
Eucgr.J01374 2.0kb downstream 2.0kb downstream 14340 true Chr10: 16163782-16178121 Eucalyptus grandis
Eucgr.J01374 2.0kb downstream 2.0kb downstream 2000 false Chr10: 16163782-16165781 Eucalyptus grandis
Eucgr.J01374 5.0kb upstream 5.0kb upstream 17340 true Chr10: 16165782-16183121 Eucalyptus grandis
Eucgr.J01374 5.0kb upstream 5.0kb upstream 5000 false Chr10: 16178122-16183121 Eucalyptus grandis
Eucgr.J01374 5.0kb downstream 5.0kb downstream 17340 true Chr10: 16160782-16178121 Eucalyptus grandis
Eucgr.J01374 5.0kb downstream 5.0kb downstream 5000 false Chr10: 16160782-16165781 Eucalyptus grandis
Eucgr.J01374 10.0kb upstream 10.0kb upstream 22340 true Chr10: 16165782-16188121 Eucalyptus grandis
Eucgr.J01374 10.0kb upstream 10.0kb upstream 10000 false Chr10: 16178122-16188121 Eucalyptus grandis
Eucgr.J01374 10.0kb downstream 10.0kb downstream 22340 true Chr10: 16155782-16178121 Eucalyptus grandis
Eucgr.J01374 10.0kb downstream 10.0kb downstream 10000 false Chr10: 16155782-16165781 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.30602 0.0 7.81135   Low
cufflinks 27.2557 0.0 61.3435    
cufflinks 11.1008 0.0 24.5691    
cufflinks 25.1746 0.0 56.513    
cufflinks 64.3275 0.0 153.68 High High
cufflinks 3.77514 0.0 8.85803   Low

0 Strain