Gene : Eucgr.J01349 E. grandis v2.0
Defline:  (1 of 2) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  1142
Name:  ? Eucgr.J01349 Secondary Identifier:  ? PAC:32032265
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis GLYCOGENSYNTH-PWY Eucalyptus grandis pathologic  
Egrandis PWY-622 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01349 0.5kb upstream 0.5kb upstream 7350 true Chr10: 15346132-15353481 Eucalyptus grandis
Eucgr.J01349 0.5kb upstream 0.5kb upstream 500 false Chr10: 15346132-15346631 Eucalyptus grandis
Eucgr.J01349 0.5kb downstream 0.5kb downstream 7350 true Chr10: 15346632-15353981 Eucalyptus grandis
Eucgr.J01349 0.5kb downstream 0.5kb downstream 500 false Chr10: 15353482-15353981 Eucalyptus grandis
Eucgr.J01349 1.0kb upstream 1.0kb upstream 7850 true Chr10: 15345632-15353481 Eucalyptus grandis
Eucgr.J01349 1.0kb upstream 1.0kb upstream 1000 false Chr10: 15345632-15346631 Eucalyptus grandis
Eucgr.J01349 1.0kb downstream 1.0kb downstream 7850 true Chr10: 15346632-15354481 Eucalyptus grandis
Eucgr.J01349 1.0kb downstream 1.0kb downstream 1000 false Chr10: 15353482-15354481 Eucalyptus grandis
Eucgr.J01349 2.0kb upstream 2.0kb upstream 8850 true Chr10: 15344632-15353481 Eucalyptus grandis
Eucgr.J01349 2.0kb upstream 2.0kb upstream 2000 false Chr10: 15344632-15346631 Eucalyptus grandis
Eucgr.J01349 2.0kb downstream 2.0kb downstream 8850 true Chr10: 15346632-15355481 Eucalyptus grandis
Eucgr.J01349 2.0kb downstream 2.0kb downstream 2000 false Chr10: 15353482-15355481 Eucalyptus grandis
Eucgr.J01349 5.0kb upstream 5.0kb upstream 11850 true Chr10: 15341632-15353481 Eucalyptus grandis
Eucgr.J01349 5.0kb upstream 5.0kb upstream 5000 false Chr10: 15341632-15346631 Eucalyptus grandis
Eucgr.J01349 5.0kb downstream 5.0kb downstream 11850 true Chr10: 15346632-15358481 Eucalyptus grandis
Eucgr.J01349 5.0kb downstream 5.0kb downstream 5000 false Chr10: 15353482-15358481 Eucalyptus grandis
Eucgr.J01349 10.0kb upstream 10.0kb upstream 16850 true Chr10: 15336632-15353481 Eucalyptus grandis
Eucgr.J01349 10.0kb upstream 10.0kb upstream 10000 false Chr10: 15336632-15346631 Eucalyptus grandis
Eucgr.J01349 10.0kb downstream 10.0kb downstream 16850 true Chr10: 15346632-15363481 Eucalyptus grandis
Eucgr.J01349 10.0kb downstream 10.0kb downstream 10000 false Chr10: 15353482-15363481 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066587 5270 Rosid View MSA
123744003 5271 Pentapetalae View MSA
122787814 5272 Eudicot View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.31628 0.0 19.5689    
cufflinks 3.57485 0.0 9.70484    
cufflinks 5.85353 0.0 14.3976    
cufflinks 4.37677 0.0 11.3028    
cufflinks 3.67866 0.0 10.0495    
cufflinks 16.5676 0.0 43.0985   High

0 Strain