Gene : Eucgr.J01152 E. grandis v2.0
Defline:  (1 of 3) PTHR28039:SF8 - CHALCONE--FLAVONONE ISOMERASE 1 Genomic Order:  1016
Name:  ? Eucgr.J01152 Secondary Identifier:  ? PAC:32034087
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY1F-FLAVSYN Eucalyptus grandis pathologic  
Egrandis PWY-5059 Eucalyptus grandis pathologic  
Egrandis PWY-6787 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01152 0.5kb upstream 0.5kb upstream 4707 true Chr10: 12615751-12620457 Eucalyptus grandis
Eucgr.J01152 0.5kb upstream 0.5kb upstream 500 false Chr10: 12619958-12620457 Eucalyptus grandis
Eucgr.J01152 0.5kb downstream 0.5kb downstream 4707 true Chr10: 12615251-12619957 Eucalyptus grandis
Eucgr.J01152 0.5kb downstream 0.5kb downstream 500 false Chr10: 12615251-12615750 Eucalyptus grandis
Eucgr.J01152 1.0kb upstream 1.0kb upstream 5207 true Chr10: 12615751-12620957 Eucalyptus grandis
Eucgr.J01152 1.0kb upstream 1.0kb upstream 1000 false Chr10: 12619958-12620957 Eucalyptus grandis
Eucgr.J01152 1.0kb downstream 1.0kb downstream 5207 true Chr10: 12614751-12619957 Eucalyptus grandis
Eucgr.J01152 1.0kb downstream 1.0kb downstream 1000 false Chr10: 12614751-12615750 Eucalyptus grandis
Eucgr.J01152 2.0kb upstream 2.0kb upstream 6207 true Chr10: 12615751-12621957 Eucalyptus grandis
Eucgr.J01152 2.0kb upstream 2.0kb upstream 2000 false Chr10: 12619958-12621957 Eucalyptus grandis
Eucgr.J01152 2.0kb downstream 2.0kb downstream 6207 true Chr10: 12613751-12619957 Eucalyptus grandis
Eucgr.J01152 2.0kb downstream 2.0kb downstream 2000 false Chr10: 12613751-12615750 Eucalyptus grandis
Eucgr.J01152 5.0kb upstream 5.0kb upstream 9207 true Chr10: 12615751-12624957 Eucalyptus grandis
Eucgr.J01152 5.0kb upstream 5.0kb upstream 5000 false Chr10: 12619958-12624957 Eucalyptus grandis
Eucgr.J01152 5.0kb downstream 5.0kb downstream 9207 true Chr10: 12610751-12619957 Eucalyptus grandis
Eucgr.J01152 5.0kb downstream 5.0kb downstream 5000 false Chr10: 12610751-12615750 Eucalyptus grandis
Eucgr.J01152 10.0kb upstream 10.0kb upstream 14207 true Chr10: 12615751-12629957 Eucalyptus grandis
Eucgr.J01152 10.0kb upstream 10.0kb upstream 10000 false Chr10: 12619958-12629957 Eucalyptus grandis
Eucgr.J01152 10.0kb downstream 10.0kb downstream 14207 true Chr10: 12605751-12619957 Eucalyptus grandis
Eucgr.J01152 10.0kb downstream 10.0kb downstream 10000 false Chr10: 12605751-12615750 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121781374 5273 Angiosperm View MSA
124051952 5270 Rosid View MSA
123749457 5271 Pentapetalae View MSA
122773155 5272 Eudicot View MSA
121052951 5274 Embryophyte View MSA
123092981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.63101 0.0 4.93966    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.00564 0.0 11.0123   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.67861 0.0 2.29734 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain