Gene : Eucgr.J01130 E. grandis v2.0
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1000
Name:  ? Eucgr.J01130 Secondary Identifier:  ? PAC:32032818
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6689 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01130 0.5kb upstream 0.5kb upstream 6101 true Chr10: 12441276-12447376 Eucalyptus grandis
Eucgr.J01130 0.5kb upstream 0.5kb upstream 500 false Chr10: 12441276-12441775 Eucalyptus grandis
Eucgr.J01130 0.5kb downstream 0.5kb downstream 6101 true Chr10: 12441776-12447876 Eucalyptus grandis
Eucgr.J01130 0.5kb downstream 0.5kb downstream 500 false Chr10: 12447377-12447876 Eucalyptus grandis
Eucgr.J01130 1.0kb upstream 1.0kb upstream 6601 true Chr10: 12440776-12447376 Eucalyptus grandis
Eucgr.J01130 1.0kb upstream 1.0kb upstream 1000 false Chr10: 12440776-12441775 Eucalyptus grandis
Eucgr.J01130 1.0kb downstream 1.0kb downstream 6601 true Chr10: 12441776-12448376 Eucalyptus grandis
Eucgr.J01130 1.0kb downstream 1.0kb downstream 1000 false Chr10: 12447377-12448376 Eucalyptus grandis
Eucgr.J01130 2.0kb upstream 2.0kb upstream 7601 true Chr10: 12439776-12447376 Eucalyptus grandis
Eucgr.J01130 2.0kb upstream 2.0kb upstream 2000 false Chr10: 12439776-12441775 Eucalyptus grandis
Eucgr.J01130 2.0kb downstream 2.0kb downstream 7601 true Chr10: 12441776-12449376 Eucalyptus grandis
Eucgr.J01130 2.0kb downstream 2.0kb downstream 2000 false Chr10: 12447377-12449376 Eucalyptus grandis
Eucgr.J01130 5.0kb upstream 5.0kb upstream 10601 true Chr10: 12436776-12447376 Eucalyptus grandis
Eucgr.J01130 5.0kb upstream 5.0kb upstream 5000 false Chr10: 12436776-12441775 Eucalyptus grandis
Eucgr.J01130 5.0kb downstream 5.0kb downstream 10601 true Chr10: 12441776-12452376 Eucalyptus grandis
Eucgr.J01130 5.0kb downstream 5.0kb downstream 5000 false Chr10: 12447377-12452376 Eucalyptus grandis
Eucgr.J01130 10.0kb upstream 10.0kb upstream 15601 true Chr10: 12431776-12447376 Eucalyptus grandis
Eucgr.J01130 10.0kb upstream 10.0kb upstream 10000 false Chr10: 12431776-12441775 Eucalyptus grandis
Eucgr.J01130 10.0kb downstream 10.0kb downstream 15601 true Chr10: 12441776-12457376 Eucalyptus grandis
Eucgr.J01130 10.0kb downstream 10.0kb downstream 10000 false Chr10: 12447377-12457376 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.1597 0.0 25.3239    
cufflinks 10.9681 0.0 24.9685    
cufflinks 9.16665 0.0 21.1102    
cufflinks 16.1599 0.0 36.053   High
cufflinks 5.01398 0.0 12.1772   Low
cufflinks 10.6613 0.0 24.2435    

0 Strain