Gene : Eucgr.J01764 E. grandis v2.0
Defline:  (1 of 2) 6.1.1.6 - Lysine--tRNA ligase / Lysyl-tRNA synthetase Genomic Order:  1482
Name:  ? Eucgr.J01764 Secondary Identifier:  ? PAC:32032197
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01764 0.5kb upstream 0.5kb upstream 8750 true Chr10: 22190399-22199148 Eucalyptus grandis
Eucgr.J01764 0.5kb upstream 0.5kb upstream 500 false Chr10: 22198649-22199148 Eucalyptus grandis
Eucgr.J01764 0.5kb downstream 0.5kb downstream 8750 true Chr10: 22189899-22198648 Eucalyptus grandis
Eucgr.J01764 0.5kb downstream 0.5kb downstream 500 false Chr10: 22189899-22190398 Eucalyptus grandis
Eucgr.J01764 1.0kb upstream 1.0kb upstream 9250 true Chr10: 22190399-22199648 Eucalyptus grandis
Eucgr.J01764 1.0kb upstream 1.0kb upstream 1000 false Chr10: 22198649-22199648 Eucalyptus grandis
Eucgr.J01764 1.0kb downstream 1.0kb downstream 9250 true Chr10: 22189399-22198648 Eucalyptus grandis
Eucgr.J01764 1.0kb downstream 1.0kb downstream 1000 false Chr10: 22189399-22190398 Eucalyptus grandis
Eucgr.J01764 2.0kb upstream 2.0kb upstream 10250 true Chr10: 22190399-22200648 Eucalyptus grandis
Eucgr.J01764 2.0kb upstream 2.0kb upstream 2000 false Chr10: 22198649-22200648 Eucalyptus grandis
Eucgr.J01764 2.0kb downstream 2.0kb downstream 10250 true Chr10: 22188399-22198648 Eucalyptus grandis
Eucgr.J01764 2.0kb downstream 2.0kb downstream 2000 false Chr10: 22188399-22190398 Eucalyptus grandis
Eucgr.J01764 5.0kb upstream 5.0kb upstream 13250 true Chr10: 22190399-22203648 Eucalyptus grandis
Eucgr.J01764 5.0kb upstream 5.0kb upstream 5000 false Chr10: 22198649-22203648 Eucalyptus grandis
Eucgr.J01764 5.0kb downstream 5.0kb downstream 13250 true Chr10: 22185399-22198648 Eucalyptus grandis
Eucgr.J01764 5.0kb downstream 5.0kb downstream 5000 false Chr10: 22185399-22190398 Eucalyptus grandis
Eucgr.J01764 10.0kb upstream 10.0kb upstream 18250 true Chr10: 22190399-22208648 Eucalyptus grandis
Eucgr.J01764 10.0kb upstream 10.0kb upstream 10000 false Chr10: 22198649-22208648 Eucalyptus grandis
Eucgr.J01764 10.0kb downstream 10.0kb downstream 18250 true Chr10: 22180399-22198648 Eucalyptus grandis
Eucgr.J01764 10.0kb downstream 10.0kb downstream 10000 false Chr10: 22180399-22190398 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.28389 0.0 20.9566    
cufflinks 5.09852 0.0 12.0288   Low
cufflinks 8.11041 0.0 22.9754    
cufflinks 8.13842 0.0 20.263    
cufflinks 7.78888 0.0 20.2243    
cufflinks 8.62159 0.0 20.7846    

0 Strain