Gene : Eucgr.J01753 E. grandis v2.0
Defline:  (1 of 1) PTHR11624:SF21 - 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA, MITOCHONDRIAL Genomic Order:  1472
Name:  ? Eucgr.J01753 Secondary Identifier:  ? PAC:32032258
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5046 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01753 0.5kb upstream 0.5kb upstream 4806 true Chr10: 22073615-22078420 Eucalyptus grandis
Eucgr.J01753 0.5kb upstream 0.5kb upstream 500 false Chr10: 22077921-22078420 Eucalyptus grandis
Eucgr.J01753 0.5kb downstream 0.5kb downstream 4806 true Chr10: 22073115-22077920 Eucalyptus grandis
Eucgr.J01753 0.5kb downstream 0.5kb downstream 500 false Chr10: 22073115-22073614 Eucalyptus grandis
Eucgr.J01753 1.0kb upstream 1.0kb upstream 5306 true Chr10: 22073615-22078920 Eucalyptus grandis
Eucgr.J01753 1.0kb upstream 1.0kb upstream 1000 false Chr10: 22077921-22078920 Eucalyptus grandis
Eucgr.J01753 1.0kb downstream 1.0kb downstream 5306 true Chr10: 22072615-22077920 Eucalyptus grandis
Eucgr.J01753 1.0kb downstream 1.0kb downstream 1000 false Chr10: 22072615-22073614 Eucalyptus grandis
Eucgr.J01753 2.0kb upstream 2.0kb upstream 6306 true Chr10: 22073615-22079920 Eucalyptus grandis
Eucgr.J01753 2.0kb upstream 2.0kb upstream 2000 false Chr10: 22077921-22079920 Eucalyptus grandis
Eucgr.J01753 2.0kb downstream 2.0kb downstream 6306 true Chr10: 22071615-22077920 Eucalyptus grandis
Eucgr.J01753 2.0kb downstream 2.0kb downstream 2000 false Chr10: 22071615-22073614 Eucalyptus grandis
Eucgr.J01753 5.0kb upstream 5.0kb upstream 9306 true Chr10: 22073615-22082920 Eucalyptus grandis
Eucgr.J01753 5.0kb upstream 5.0kb upstream 5000 false Chr10: 22077921-22082920 Eucalyptus grandis
Eucgr.J01753 5.0kb downstream 5.0kb downstream 9306 true Chr10: 22068615-22077920 Eucalyptus grandis
Eucgr.J01753 5.0kb downstream 5.0kb downstream 5000 false Chr10: 22068615-22073614 Eucalyptus grandis
Eucgr.J01753 10.0kb upstream 10.0kb upstream 14306 true Chr10: 22073615-22087920 Eucalyptus grandis
Eucgr.J01753 10.0kb upstream 10.0kb upstream 10000 false Chr10: 22077921-22087920 Eucalyptus grandis
Eucgr.J01753 10.0kb downstream 10.0kb downstream 14306 true Chr10: 22063615-22077920 Eucalyptus grandis
Eucgr.J01753 10.0kb downstream 10.0kb downstream 10000 false Chr10: 22063615-22073614 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067270 5270 Rosid View MSA
123743874 5271 Pentapetalae View MSA
122787684 5272 Eudicot View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.2163 0.0 31.5665    
cufflinks 5.96566 0.0 14.6095    
cufflinks 13.7865 0.0 32.6293    
cufflinks 1.5685 0.0 4.69948   Low
cufflinks 1.19915 0.0 3.80686   Low
cufflinks 19.4209 0.0 44.6805   High

0 Strain