Gene : Eucgr.J01718 E. grandis v2.0
Defline:  (1 of 1) PTHR13069:SF11 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6 Genomic Order:  1448
Name:  ? Eucgr.J01718 Secondary Identifier:  ? PAC:32034750
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6829 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01718 0.5kb upstream 0.5kb upstream 2590 true Chr10: 21632080-21634669 Eucalyptus grandis
Eucgr.J01718 0.5kb upstream 0.5kb upstream 500 false Chr10: 21634170-21634669 Eucalyptus grandis
Eucgr.J01718 0.5kb downstream 0.5kb downstream 2590 true Chr10: 21631580-21634169 Eucalyptus grandis
Eucgr.J01718 0.5kb downstream 0.5kb downstream 500 false Chr10: 21631580-21632079 Eucalyptus grandis
Eucgr.J01718 1.0kb upstream 1.0kb upstream 3090 true Chr10: 21632080-21635169 Eucalyptus grandis
Eucgr.J01718 1.0kb upstream 1.0kb upstream 1000 false Chr10: 21634170-21635169 Eucalyptus grandis
Eucgr.J01718 1.0kb downstream 1.0kb downstream 3090 true Chr10: 21631080-21634169 Eucalyptus grandis
Eucgr.J01718 1.0kb downstream 1.0kb downstream 1000 false Chr10: 21631080-21632079 Eucalyptus grandis
Eucgr.J01718 2.0kb upstream 2.0kb upstream 4090 true Chr10: 21632080-21636169 Eucalyptus grandis
Eucgr.J01718 2.0kb upstream 2.0kb upstream 2000 false Chr10: 21634170-21636169 Eucalyptus grandis
Eucgr.J01718 2.0kb downstream 2.0kb downstream 4090 true Chr10: 21630080-21634169 Eucalyptus grandis
Eucgr.J01718 2.0kb downstream 2.0kb downstream 2000 false Chr10: 21630080-21632079 Eucalyptus grandis
Eucgr.J01718 5.0kb upstream 5.0kb upstream 7090 true Chr10: 21632080-21639169 Eucalyptus grandis
Eucgr.J01718 5.0kb upstream 5.0kb upstream 5000 false Chr10: 21634170-21639169 Eucalyptus grandis
Eucgr.J01718 5.0kb downstream 5.0kb downstream 7090 true Chr10: 21627080-21634169 Eucalyptus grandis
Eucgr.J01718 5.0kb downstream 5.0kb downstream 5000 false Chr10: 21627080-21632079 Eucalyptus grandis
Eucgr.J01718 10.0kb upstream 10.0kb upstream 12090 true Chr10: 21632080-21644169 Eucalyptus grandis
Eucgr.J01718 10.0kb upstream 10.0kb upstream 10000 false Chr10: 21634170-21644169 Eucalyptus grandis
Eucgr.J01718 10.0kb downstream 10.0kb downstream 12090 true Chr10: 21622080-21634169 Eucalyptus grandis
Eucgr.J01718 10.0kb downstream 10.0kb downstream 10000 false Chr10: 21622080-21632079 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065403 5270 Rosid View MSA
123740890 5271 Pentapetalae View MSA
122791933 5272 Eudicot View MSA
122044180 5273 Angiosperm View MSA
121345583 5274 Embryophyte View MSA
123428839 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.4512 0.0 29.1316    
cufflinks 3.45132 0.0 9.77461   Low
cufflinks 7.19235 0.0 19.1276    
cufflinks 5.64638 0.0 15.3031    
cufflinks 13.3566 0.0 33.2338   High
cufflinks 8.70838 0.0 22.9929    

0 Strain