Gene : Eucgr.J02238 E. grandis v2.0
Defline:  (1 of 1) PTHR22852 - LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN Genomic Order:  1898
Name:  ? Eucgr.J02238 Secondary Identifier:  ? PAC:32034744
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02238 0.5kb upstream 0.5kb upstream 5268 true Chr10: 27485119-27490386 Eucalyptus grandis
Eucgr.J02238 0.5kb upstream 0.5kb upstream 500 false Chr10: 27489887-27490386 Eucalyptus grandis
Eucgr.J02238 0.5kb downstream 0.5kb downstream 5268 true Chr10: 27484619-27489886 Eucalyptus grandis
Eucgr.J02238 0.5kb downstream 0.5kb downstream 500 false Chr10: 27484619-27485118 Eucalyptus grandis
Eucgr.J02238 1.0kb upstream 1.0kb upstream 5768 true Chr10: 27485119-27490886 Eucalyptus grandis
Eucgr.J02238 1.0kb upstream 1.0kb upstream 1000 false Chr10: 27489887-27490886 Eucalyptus grandis
Eucgr.J02238 1.0kb downstream 1.0kb downstream 5768 true Chr10: 27484119-27489886 Eucalyptus grandis
Eucgr.J02238 1.0kb downstream 1.0kb downstream 1000 false Chr10: 27484119-27485118 Eucalyptus grandis
Eucgr.J02238 2.0kb upstream 2.0kb upstream 6768 true Chr10: 27485119-27491886 Eucalyptus grandis
Eucgr.J02238 2.0kb upstream 2.0kb upstream 2000 false Chr10: 27489887-27491886 Eucalyptus grandis
Eucgr.J02238 2.0kb downstream 2.0kb downstream 6768 true Chr10: 27483119-27489886 Eucalyptus grandis
Eucgr.J02238 2.0kb downstream 2.0kb downstream 2000 false Chr10: 27483119-27485118 Eucalyptus grandis
Eucgr.J02238 5.0kb upstream 5.0kb upstream 9768 true Chr10: 27485119-27494886 Eucalyptus grandis
Eucgr.J02238 5.0kb upstream 5.0kb upstream 5000 false Chr10: 27489887-27494886 Eucalyptus grandis
Eucgr.J02238 5.0kb downstream 5.0kb downstream 9768 true Chr10: 27480119-27489886 Eucalyptus grandis
Eucgr.J02238 5.0kb downstream 5.0kb downstream 5000 false Chr10: 27480119-27485118 Eucalyptus grandis
Eucgr.J02238 10.0kb upstream 10.0kb upstream 14768 true Chr10: 27485119-27499886 Eucalyptus grandis
Eucgr.J02238 10.0kb upstream 10.0kb upstream 10000 false Chr10: 27489887-27499886 Eucalyptus grandis
Eucgr.J02238 10.0kb downstream 10.0kb downstream 14768 true Chr10: 27475119-27489886 Eucalyptus grandis
Eucgr.J02238 10.0kb downstream 10.0kb downstream 10000 false Chr10: 27475119-27485118 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041110 5273 Angiosperm View MSA
124066705 5270 Rosid View MSA
123738677 5271 Pentapetalae View MSA
122787959 5272 Eudicot View MSA
121344109 5274 Embryophyte View MSA
123428561 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.98946 0.0 5.36121    
cufflinks 1.95094 0.0 5.24744    
cufflinks 1.0309 0.0 2.96829    
cufflinks 0.730258 0.0 2.18005   Low
cufflinks 5.22527 0.0 12.777   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain