Gene : Eucgr.J02071 E. grandis v2.0
Defline:  (1 of 15) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  1748
Name:  ? Eucgr.J02071 Secondary Identifier:  ? PAC:32034237
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02071 0.5kb upstream 0.5kb upstream 4999 true Chr10: 25899212-25904210 Eucalyptus grandis
Eucgr.J02071 0.5kb upstream 0.5kb upstream 500 false Chr10: 25903711-25904210 Eucalyptus grandis
Eucgr.J02071 0.5kb downstream 0.5kb downstream 4999 true Chr10: 25898712-25903710 Eucalyptus grandis
Eucgr.J02071 0.5kb downstream 0.5kb downstream 500 false Chr10: 25898712-25899211 Eucalyptus grandis
Eucgr.J02071 1.0kb upstream 1.0kb upstream 5499 true Chr10: 25899212-25904710 Eucalyptus grandis
Eucgr.J02071 1.0kb upstream 1.0kb upstream 1000 false Chr10: 25903711-25904710 Eucalyptus grandis
Eucgr.J02071 1.0kb downstream 1.0kb downstream 5499 true Chr10: 25898212-25903710 Eucalyptus grandis
Eucgr.J02071 1.0kb downstream 1.0kb downstream 1000 false Chr10: 25898212-25899211 Eucalyptus grandis
Eucgr.J02071 2.0kb upstream 2.0kb upstream 6499 true Chr10: 25899212-25905710 Eucalyptus grandis
Eucgr.J02071 2.0kb upstream 2.0kb upstream 2000 false Chr10: 25903711-25905710 Eucalyptus grandis
Eucgr.J02071 2.0kb downstream 2.0kb downstream 6499 true Chr10: 25897212-25903710 Eucalyptus grandis
Eucgr.J02071 2.0kb downstream 2.0kb downstream 2000 false Chr10: 25897212-25899211 Eucalyptus grandis
Eucgr.J02071 5.0kb upstream 5.0kb upstream 9499 true Chr10: 25899212-25908710 Eucalyptus grandis
Eucgr.J02071 5.0kb upstream 5.0kb upstream 5000 false Chr10: 25903711-25908710 Eucalyptus grandis
Eucgr.J02071 5.0kb downstream 5.0kb downstream 9499 true Chr10: 25894212-25903710 Eucalyptus grandis
Eucgr.J02071 5.0kb downstream 5.0kb downstream 5000 false Chr10: 25894212-25899211 Eucalyptus grandis
Eucgr.J02071 10.0kb upstream 10.0kb upstream 14499 true Chr10: 25899212-25913710 Eucalyptus grandis
Eucgr.J02071 10.0kb upstream 10.0kb upstream 10000 false Chr10: 25903711-25913710 Eucalyptus grandis
Eucgr.J02071 10.0kb downstream 10.0kb downstream 14499 true Chr10: 25889212-25903710 Eucalyptus grandis
Eucgr.J02071 10.0kb downstream 10.0kb downstream 10000 false Chr10: 25889212-25899211 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065450 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.84631 0.0 11.5518    
cufflinks 7.05932 0.0 17.1978   High
cufflinks 4.00706 0.0 9.69231    
cufflinks 3.91557 0.0 10.9317    
cufflinks 5.23376 0.0 12.3391    
cufflinks 4.23184 0.0 10.3804    

0 Strain