Gene : Eucgr.J01999 E. grandis v2.0
Defline:  (1 of 1) PF00575//PF03876 - S1 RNA binding domain (S1) // SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) Genomic Order:  1688
Name:  ? Eucgr.J01999 Secondary Identifier:  ? PAC:32032834
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J01999 0.5kb upstream 0.5kb upstream 2309 true Chr10: 25265333-25267641 Eucalyptus grandis
Eucgr.J01999 0.5kb upstream 0.5kb upstream 500 false Chr10: 25265333-25265832 Eucalyptus grandis
Eucgr.J01999 0.5kb downstream 0.5kb downstream 2309 true Chr10: 25265833-25268141 Eucalyptus grandis
Eucgr.J01999 0.5kb downstream 0.5kb downstream 500 false Chr10: 25267642-25268141 Eucalyptus grandis
Eucgr.J01999 1.0kb upstream 1.0kb upstream 2809 true Chr10: 25264833-25267641 Eucalyptus grandis
Eucgr.J01999 1.0kb upstream 1.0kb upstream 1000 false Chr10: 25264833-25265832 Eucalyptus grandis
Eucgr.J01999 1.0kb downstream 1.0kb downstream 2809 true Chr10: 25265833-25268641 Eucalyptus grandis
Eucgr.J01999 1.0kb downstream 1.0kb downstream 1000 false Chr10: 25267642-25268641 Eucalyptus grandis
Eucgr.J01999 2.0kb upstream 2.0kb upstream 3809 true Chr10: 25263833-25267641 Eucalyptus grandis
Eucgr.J01999 2.0kb upstream 2.0kb upstream 2000 false Chr10: 25263833-25265832 Eucalyptus grandis
Eucgr.J01999 2.0kb downstream 2.0kb downstream 3809 true Chr10: 25265833-25269641 Eucalyptus grandis
Eucgr.J01999 2.0kb downstream 2.0kb downstream 2000 false Chr10: 25267642-25269641 Eucalyptus grandis
Eucgr.J01999 5.0kb upstream 5.0kb upstream 6809 true Chr10: 25260833-25267641 Eucalyptus grandis
Eucgr.J01999 5.0kb upstream 5.0kb upstream 5000 false Chr10: 25260833-25265832 Eucalyptus grandis
Eucgr.J01999 5.0kb downstream 5.0kb downstream 6809 true Chr10: 25265833-25272641 Eucalyptus grandis
Eucgr.J01999 5.0kb downstream 5.0kb downstream 5000 false Chr10: 25267642-25272641 Eucalyptus grandis
Eucgr.J01999 10.0kb upstream 10.0kb upstream 11809 true Chr10: 25255833-25267641 Eucalyptus grandis
Eucgr.J01999 10.0kb upstream 10.0kb upstream 10000 false Chr10: 25255833-25265832 Eucalyptus grandis
Eucgr.J01999 10.0kb downstream 10.0kb downstream 11809 true Chr10: 25265833-25277641 Eucalyptus grandis
Eucgr.J01999 10.0kb downstream 10.0kb downstream 10000 false Chr10: 25267642-25277641 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066331 5270 Rosid View MSA
123736511 5271 Pentapetalae View MSA
122789999 5272 Eudicot View MSA
122045109 5273 Angiosperm View MSA
121343808 5274 Embryophyte View MSA
123424516 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.6116 0.0 128.448 High  
cufflinks 40.5773 0.0 96.6853   Low
cufflinks 100.474 0.0 226.727 High High
cufflinks 75.4159 0.0 172.571 High  
cufflinks 97.6475 0.0 219.462 High High
cufflinks 50.0329 0.0 119.808 High  

0 Strain