Gene : Eucgr.J02000 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1689
Name:  ? Eucgr.J02000 Secondary Identifier:  ? PAC:32032209
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02000 0.5kb upstream 0.5kb upstream 2501 true Chr10: 25273269-25275769 Eucalyptus grandis
Eucgr.J02000 0.5kb upstream 0.5kb upstream 500 false Chr10: 25273269-25273768 Eucalyptus grandis
Eucgr.J02000 0.5kb downstream 0.5kb downstream 2501 true Chr10: 25273769-25276269 Eucalyptus grandis
Eucgr.J02000 0.5kb downstream 0.5kb downstream 500 false Chr10: 25275770-25276269 Eucalyptus grandis
Eucgr.J02000 1.0kb upstream 1.0kb upstream 3001 true Chr10: 25272769-25275769 Eucalyptus grandis
Eucgr.J02000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 25272769-25273768 Eucalyptus grandis
Eucgr.J02000 1.0kb downstream 1.0kb downstream 3001 true Chr10: 25273769-25276769 Eucalyptus grandis
Eucgr.J02000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 25275770-25276769 Eucalyptus grandis
Eucgr.J02000 2.0kb upstream 2.0kb upstream 4001 true Chr10: 25271769-25275769 Eucalyptus grandis
Eucgr.J02000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 25271769-25273768 Eucalyptus grandis
Eucgr.J02000 2.0kb downstream 2.0kb downstream 4001 true Chr10: 25273769-25277769 Eucalyptus grandis
Eucgr.J02000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 25275770-25277769 Eucalyptus grandis
Eucgr.J02000 5.0kb upstream 5.0kb upstream 7001 true Chr10: 25268769-25275769 Eucalyptus grandis
Eucgr.J02000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 25268769-25273768 Eucalyptus grandis
Eucgr.J02000 5.0kb downstream 5.0kb downstream 7001 true Chr10: 25273769-25280769 Eucalyptus grandis
Eucgr.J02000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 25275770-25280769 Eucalyptus grandis
Eucgr.J02000 10.0kb upstream 10.0kb upstream 12001 true Chr10: 25263769-25275769 Eucalyptus grandis
Eucgr.J02000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 25263769-25273768 Eucalyptus grandis
Eucgr.J02000 10.0kb downstream 10.0kb downstream 12001 true Chr10: 25273769-25285769 Eucalyptus grandis
Eucgr.J02000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 25275770-25285769 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
124062033 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.08545 0.0 3.01719    
cufflinks 0.298801 0.0 0.961978 Low  
cufflinks 0.619575 0.0 1.82492    
cufflinks 0.177553 0.0 0.609672 Low Low
cufflinks 1.03542 0.0 2.89229    
cufflinks 1.90258 0.0 5.02342   High

0 Strain