Gene : Eucgr.J02807 E. grandis v2.0
Defline:  (1 of 1) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  2313
Name:  ? Eucgr.J02807 Secondary Identifier:  ? PAC:32033574
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5409 Eucalyptus grandis pathologic  
Egrandis PWY-735 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02807 0.5kb upstream 0.5kb upstream 6331 true Chr10: 33524015-33530345 Eucalyptus grandis
Eucgr.J02807 0.5kb upstream 0.5kb upstream 500 false Chr10: 33524015-33524514 Eucalyptus grandis
Eucgr.J02807 0.5kb downstream 0.5kb downstream 6331 true Chr10: 33524515-33530845 Eucalyptus grandis
Eucgr.J02807 0.5kb downstream 0.5kb downstream 500 false Chr10: 33530346-33530845 Eucalyptus grandis
Eucgr.J02807 1.0kb upstream 1.0kb upstream 6831 true Chr10: 33523515-33530345 Eucalyptus grandis
Eucgr.J02807 1.0kb upstream 1.0kb upstream 1000 false Chr10: 33523515-33524514 Eucalyptus grandis
Eucgr.J02807 1.0kb downstream 1.0kb downstream 6831 true Chr10: 33524515-33531345 Eucalyptus grandis
Eucgr.J02807 1.0kb downstream 1.0kb downstream 1000 false Chr10: 33530346-33531345 Eucalyptus grandis
Eucgr.J02807 2.0kb upstream 2.0kb upstream 7831 true Chr10: 33522515-33530345 Eucalyptus grandis
Eucgr.J02807 2.0kb upstream 2.0kb upstream 2000 false Chr10: 33522515-33524514 Eucalyptus grandis
Eucgr.J02807 2.0kb downstream 2.0kb downstream 7831 true Chr10: 33524515-33532345 Eucalyptus grandis
Eucgr.J02807 2.0kb downstream 2.0kb downstream 2000 false Chr10: 33530346-33532345 Eucalyptus grandis
Eucgr.J02807 5.0kb upstream 5.0kb upstream 10831 true Chr10: 33519515-33530345 Eucalyptus grandis
Eucgr.J02807 5.0kb upstream 5.0kb upstream 5000 false Chr10: 33519515-33524514 Eucalyptus grandis
Eucgr.J02807 5.0kb downstream 5.0kb downstream 10831 true Chr10: 33524515-33535345 Eucalyptus grandis
Eucgr.J02807 5.0kb downstream 5.0kb downstream 5000 false Chr10: 33530346-33535345 Eucalyptus grandis
Eucgr.J02807 10.0kb upstream 10.0kb upstream 15831 true Chr10: 33514515-33530345 Eucalyptus grandis
Eucgr.J02807 10.0kb upstream 10.0kb upstream 10000 false Chr10: 33514515-33524514 Eucalyptus grandis
Eucgr.J02807 10.0kb downstream 10.0kb downstream 15831 true Chr10: 33524515-33540345 Eucalyptus grandis
Eucgr.J02807 10.0kb downstream 10.0kb downstream 10000 false Chr10: 33530346-33540345 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 215.224 0.0 845.155 High High
cufflinks 61.8649 0.0 147.128 High  
cufflinks 271.236 0.0 1224.53 High High
cufflinks 33.9113 0.0 91.4534   Low
cufflinks 36.5559 0.0 83.3309    
cufflinks 101.721 0.0 262.786 High  

0 Strain