Gene : Eucgr.J02558 E. grandis v2.0
Defline:  (1 of 8) KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Genomic Order:  2173
Name:  ? Eucgr.J02558 Secondary Identifier:  ? PAC:32035142
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02558 0.5kb upstream 0.5kb upstream 5238 true Chr10: 30691422-30696659 Eucalyptus grandis
Eucgr.J02558 0.5kb upstream 0.5kb upstream 500 false Chr10: 30696160-30696659 Eucalyptus grandis
Eucgr.J02558 0.5kb downstream 0.5kb downstream 5238 true Chr10: 30690922-30696159 Eucalyptus grandis
Eucgr.J02558 0.5kb downstream 0.5kb downstream 500 false Chr10: 30690922-30691421 Eucalyptus grandis
Eucgr.J02558 1.0kb upstream 1.0kb upstream 5738 true Chr10: 30691422-30697159 Eucalyptus grandis
Eucgr.J02558 1.0kb upstream 1.0kb upstream 1000 false Chr10: 30696160-30697159 Eucalyptus grandis
Eucgr.J02558 1.0kb downstream 1.0kb downstream 5738 true Chr10: 30690422-30696159 Eucalyptus grandis
Eucgr.J02558 1.0kb downstream 1.0kb downstream 1000 false Chr10: 30690422-30691421 Eucalyptus grandis
Eucgr.J02558 2.0kb upstream 2.0kb upstream 6738 true Chr10: 30691422-30698159 Eucalyptus grandis
Eucgr.J02558 2.0kb upstream 2.0kb upstream 2000 false Chr10: 30696160-30698159 Eucalyptus grandis
Eucgr.J02558 2.0kb downstream 2.0kb downstream 6738 true Chr10: 30689422-30696159 Eucalyptus grandis
Eucgr.J02558 2.0kb downstream 2.0kb downstream 2000 false Chr10: 30689422-30691421 Eucalyptus grandis
Eucgr.J02558 5.0kb upstream 5.0kb upstream 9738 true Chr10: 30691422-30701159 Eucalyptus grandis
Eucgr.J02558 5.0kb upstream 5.0kb upstream 5000 false Chr10: 30696160-30701159 Eucalyptus grandis
Eucgr.J02558 5.0kb downstream 5.0kb downstream 9738 true Chr10: 30686422-30696159 Eucalyptus grandis
Eucgr.J02558 5.0kb downstream 5.0kb downstream 5000 false Chr10: 30686422-30691421 Eucalyptus grandis
Eucgr.J02558 10.0kb upstream 10.0kb upstream 14738 true Chr10: 30691422-30706159 Eucalyptus grandis
Eucgr.J02558 10.0kb upstream 10.0kb upstream 10000 false Chr10: 30696160-30706159 Eucalyptus grandis
Eucgr.J02558 10.0kb downstream 10.0kb downstream 14738 true Chr10: 30681422-30696159 Eucalyptus grandis
Eucgr.J02558 10.0kb downstream 10.0kb downstream 10000 false Chr10: 30681422-30691421 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065474 5270 Rosid View MSA
123753453 5271 Pentapetalae View MSA
122797686 5272 Eudicot View MSA
122043296 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121350049 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.0525 0.0 39.9986   Low
cufflinks 27.8417 0.0 66.9819    
cufflinks 14.0447 0.0 38.4464   Low
cufflinks 34.6551 0.0 90.3295   High
cufflinks 20.1934 0.0 49.217    
cufflinks 26.3556 0.0 67.6844    

0 Strain