Gene : Eucgr.J02479 E. grandis v2.0
Defline:  (1 of 503) PF01535 - PPR repeat (PPR) Genomic Order:  2104
Name:  ? Eucgr.J02479 Secondary Identifier:  ? PAC:32032801
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02479 0.5kb upstream 0.5kb upstream 2640 true Chr10: 30124280-30126919 Eucalyptus grandis
Eucgr.J02479 0.5kb upstream 0.5kb upstream 500 false Chr10: 30126420-30126919 Eucalyptus grandis
Eucgr.J02479 0.5kb downstream 0.5kb downstream 2640 true Chr10: 30123780-30126419 Eucalyptus grandis
Eucgr.J02479 0.5kb downstream 0.5kb downstream 500 false Chr10: 30123780-30124279 Eucalyptus grandis
Eucgr.J02479 1.0kb upstream 1.0kb upstream 3140 true Chr10: 30124280-30127419 Eucalyptus grandis
Eucgr.J02479 1.0kb upstream 1.0kb upstream 1000 false Chr10: 30126420-30127419 Eucalyptus grandis
Eucgr.J02479 1.0kb downstream 1.0kb downstream 3140 true Chr10: 30123280-30126419 Eucalyptus grandis
Eucgr.J02479 1.0kb downstream 1.0kb downstream 1000 false Chr10: 30123280-30124279 Eucalyptus grandis
Eucgr.J02479 2.0kb upstream 2.0kb upstream 4140 true Chr10: 30124280-30128419 Eucalyptus grandis
Eucgr.J02479 2.0kb upstream 2.0kb upstream 2000 false Chr10: 30126420-30128419 Eucalyptus grandis
Eucgr.J02479 2.0kb downstream 2.0kb downstream 4140 true Chr10: 30122280-30126419 Eucalyptus grandis
Eucgr.J02479 2.0kb downstream 2.0kb downstream 2000 false Chr10: 30122280-30124279 Eucalyptus grandis
Eucgr.J02479 5.0kb upstream 5.0kb upstream 7140 true Chr10: 30124280-30131419 Eucalyptus grandis
Eucgr.J02479 5.0kb upstream 5.0kb upstream 5000 false Chr10: 30126420-30131419 Eucalyptus grandis
Eucgr.J02479 5.0kb downstream 5.0kb downstream 7140 true Chr10: 30119280-30126419 Eucalyptus grandis
Eucgr.J02479 5.0kb downstream 5.0kb downstream 5000 false Chr10: 30119280-30124279 Eucalyptus grandis
Eucgr.J02479 10.0kb upstream 10.0kb upstream 12140 true Chr10: 30124280-30136419 Eucalyptus grandis
Eucgr.J02479 10.0kb upstream 10.0kb upstream 10000 false Chr10: 30126420-30136419 Eucalyptus grandis
Eucgr.J02479 10.0kb downstream 10.0kb downstream 12140 true Chr10: 30114280-30126419 Eucalyptus grandis
Eucgr.J02479 10.0kb downstream 10.0kb downstream 10000 false Chr10: 30114280-30124279 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051517 5270 Rosid View MSA
123741798 5271 Pentapetalae View MSA
122789514 5272 Eudicot View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.305 0.0 12.639    
cufflinks 3.899 0.0 9.56127    
cufflinks 4.78649 0.0 11.5161    
cufflinks 1.1752 0.0 3.24234   Low
cufflinks 10.3824 0.0 23.4889   High
cufflinks 1.89367 0.0 4.9999    

0 Strain