Gene : Eucgr.J03184 E. grandis v2.0
Defline:  (1 of 1) PTHR26312:SF0 - TETRATRICOPEPTIDE REPEAT PROTEIN 5 Genomic Order:  2645
Name:  ? Eucgr.J03184 Secondary Identifier:  ? PAC:32032817
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J03184 0.5kb upstream 0.5kb upstream 9960 true Chr10: 37489637-37499596 Eucalyptus grandis
Eucgr.J03184 0.5kb upstream 0.5kb upstream 500 false Chr10: 37499097-37499596 Eucalyptus grandis
Eucgr.J03184 0.5kb downstream 0.5kb downstream 9960 true Chr10: 37489137-37499096 Eucalyptus grandis
Eucgr.J03184 0.5kb downstream 0.5kb downstream 500 false Chr10: 37489137-37489636 Eucalyptus grandis
Eucgr.J03184 1.0kb upstream 1.0kb upstream 10460 true Chr10: 37489637-37500096 Eucalyptus grandis
Eucgr.J03184 1.0kb upstream 1.0kb upstream 1000 false Chr10: 37499097-37500096 Eucalyptus grandis
Eucgr.J03184 1.0kb downstream 1.0kb downstream 10460 true Chr10: 37488637-37499096 Eucalyptus grandis
Eucgr.J03184 1.0kb downstream 1.0kb downstream 1000 false Chr10: 37488637-37489636 Eucalyptus grandis
Eucgr.J03184 2.0kb upstream 2.0kb upstream 11460 true Chr10: 37489637-37501096 Eucalyptus grandis
Eucgr.J03184 2.0kb upstream 2.0kb upstream 2000 false Chr10: 37499097-37501096 Eucalyptus grandis
Eucgr.J03184 2.0kb downstream 2.0kb downstream 11460 true Chr10: 37487637-37499096 Eucalyptus grandis
Eucgr.J03184 2.0kb downstream 2.0kb downstream 2000 false Chr10: 37487637-37489636 Eucalyptus grandis
Eucgr.J03184 5.0kb upstream 5.0kb upstream 14460 true Chr10: 37489637-37504096 Eucalyptus grandis
Eucgr.J03184 5.0kb upstream 5.0kb upstream 5000 false Chr10: 37499097-37504096 Eucalyptus grandis
Eucgr.J03184 5.0kb downstream 5.0kb downstream 14460 true Chr10: 37484637-37499096 Eucalyptus grandis
Eucgr.J03184 5.0kb downstream 5.0kb downstream 5000 false Chr10: 37484637-37489636 Eucalyptus grandis
Eucgr.J03184 10.0kb upstream 10.0kb upstream 19460 true Chr10: 37489637-37509096 Eucalyptus grandis
Eucgr.J03184 10.0kb upstream 10.0kb upstream 10000 false Chr10: 37499097-37509096 Eucalyptus grandis
Eucgr.J03184 10.0kb downstream 10.0kb downstream 19460 true Chr10: 37479637-37499096 Eucalyptus grandis
Eucgr.J03184 10.0kb downstream 10.0kb downstream 10000 false Chr10: 37479637-37489636 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041405 5273 Angiosperm View MSA
124065158 5270 Rosid View MSA
123747487 5271 Pentapetalae View MSA
122792226 5272 Eudicot View MSA
121343833 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.94217 0.0 14.3557    
cufflinks 3.49842 0.0 8.88244    
cufflinks 4.34618 0.0 10.804    
cufflinks 1.52148 0.0 4.18282   Low
cufflinks 3.22575 0.0 8.26504    
cufflinks 11.2692 0.0 25.8229   High

0 Strain