Gene : Eucgr.J02960 E. grandis v2.0
Defline:  (1 of 2) PTHR10996//PTHR10996:SF139 - 2-HYDROXYACID DEHYDROGENASE-RELATED Genomic Order:  2439
Name:  ? Eucgr.J02960 Secondary Identifier:  ? PAC:32033589
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5049 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02960 0.5kb upstream 0.5kb upstream 1842 true Chr10: 35233010-35234851 Eucalyptus grandis
Eucgr.J02960 0.5kb upstream 0.5kb upstream 500 false Chr10: 35233010-35233509 Eucalyptus grandis
Eucgr.J02960 0.5kb downstream 0.5kb downstream 1842 true Chr10: 35233510-35235351 Eucalyptus grandis
Eucgr.J02960 0.5kb downstream 0.5kb downstream 500 false Chr10: 35234852-35235351 Eucalyptus grandis
Eucgr.J02960 1.0kb upstream 1.0kb upstream 2342 true Chr10: 35232510-35234851 Eucalyptus grandis
Eucgr.J02960 1.0kb upstream 1.0kb upstream 1000 false Chr10: 35232510-35233509 Eucalyptus grandis
Eucgr.J02960 1.0kb downstream 1.0kb downstream 2342 true Chr10: 35233510-35235851 Eucalyptus grandis
Eucgr.J02960 1.0kb downstream 1.0kb downstream 1000 false Chr10: 35234852-35235851 Eucalyptus grandis
Eucgr.J02960 2.0kb upstream 2.0kb upstream 3342 true Chr10: 35231510-35234851 Eucalyptus grandis
Eucgr.J02960 2.0kb upstream 2.0kb upstream 2000 false Chr10: 35231510-35233509 Eucalyptus grandis
Eucgr.J02960 2.0kb downstream 2.0kb downstream 3342 true Chr10: 35233510-35236851 Eucalyptus grandis
Eucgr.J02960 2.0kb downstream 2.0kb downstream 2000 false Chr10: 35234852-35236851 Eucalyptus grandis
Eucgr.J02960 5.0kb upstream 5.0kb upstream 6342 true Chr10: 35228510-35234851 Eucalyptus grandis
Eucgr.J02960 5.0kb upstream 5.0kb upstream 5000 false Chr10: 35228510-35233509 Eucalyptus grandis
Eucgr.J02960 5.0kb downstream 5.0kb downstream 6342 true Chr10: 35233510-35239851 Eucalyptus grandis
Eucgr.J02960 5.0kb downstream 5.0kb downstream 5000 false Chr10: 35234852-35239851 Eucalyptus grandis
Eucgr.J02960 10.0kb upstream 10.0kb upstream 11342 true Chr10: 35223510-35234851 Eucalyptus grandis
Eucgr.J02960 10.0kb upstream 10.0kb upstream 10000 false Chr10: 35223510-35233509 Eucalyptus grandis
Eucgr.J02960 10.0kb downstream 10.0kb downstream 11342 true Chr10: 35233510-35244851 Eucalyptus grandis
Eucgr.J02960 10.0kb downstream 10.0kb downstream 10000 false Chr10: 35234852-35244851 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073106 5270 Rosid View MSA
123749177 5271 Pentapetalae View MSA
122790806 5272 Eudicot View MSA
122049787 5273 Angiosperm View MSA
121349350 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.88461 0.0 12.5747    
cufflinks 2.89047 0.0 7.94855   Low
cufflinks 3.53528 0.0 9.5139    
cufflinks 9.07987 0.0 22.3804    
cufflinks 13.1882 0.0 31.18   High
cufflinks 3.85364 0.0 10.0249    

0 Strain