Gene : Eucgr.J02895 E. grandis v2.0
Defline:  (1 of 3) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  2387
Name:  ? Eucgr.J02895 Secondary Identifier:  ? PAC:32034007
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.J02895 0.5kb upstream 0.5kb upstream 4933 true Chr10: 34447305-34452237 Eucalyptus grandis
Eucgr.J02895 0.5kb upstream 0.5kb upstream 500 false Chr10: 34447305-34447804 Eucalyptus grandis
Eucgr.J02895 0.5kb downstream 0.5kb downstream 4933 true Chr10: 34447805-34452737 Eucalyptus grandis
Eucgr.J02895 0.5kb downstream 0.5kb downstream 500 false Chr10: 34452238-34452737 Eucalyptus grandis
Eucgr.J02895 1.0kb upstream 1.0kb upstream 5433 true Chr10: 34446805-34452237 Eucalyptus grandis
Eucgr.J02895 1.0kb upstream 1.0kb upstream 1000 false Chr10: 34446805-34447804 Eucalyptus grandis
Eucgr.J02895 1.0kb downstream 1.0kb downstream 5433 true Chr10: 34447805-34453237 Eucalyptus grandis
Eucgr.J02895 1.0kb downstream 1.0kb downstream 1000 false Chr10: 34452238-34453237 Eucalyptus grandis
Eucgr.J02895 2.0kb upstream 2.0kb upstream 6433 true Chr10: 34445805-34452237 Eucalyptus grandis
Eucgr.J02895 2.0kb upstream 2.0kb upstream 2000 false Chr10: 34445805-34447804 Eucalyptus grandis
Eucgr.J02895 2.0kb downstream 2.0kb downstream 6433 true Chr10: 34447805-34454237 Eucalyptus grandis
Eucgr.J02895 2.0kb downstream 2.0kb downstream 2000 false Chr10: 34452238-34454237 Eucalyptus grandis
Eucgr.J02895 5.0kb upstream 5.0kb upstream 9433 true Chr10: 34442805-34452237 Eucalyptus grandis
Eucgr.J02895 5.0kb upstream 5.0kb upstream 5000 false Chr10: 34442805-34447804 Eucalyptus grandis
Eucgr.J02895 5.0kb downstream 5.0kb downstream 9433 true Chr10: 34447805-34457237 Eucalyptus grandis
Eucgr.J02895 5.0kb downstream 5.0kb downstream 5000 false Chr10: 34452238-34457237 Eucalyptus grandis
Eucgr.J02895 10.0kb upstream 10.0kb upstream 14433 true Chr10: 34437805-34452237 Eucalyptus grandis
Eucgr.J02895 10.0kb upstream 10.0kb upstream 10000 false Chr10: 34437805-34447804 Eucalyptus grandis
Eucgr.J02895 10.0kb downstream 10.0kb downstream 14433 true Chr10: 34447805-34462237 Eucalyptus grandis
Eucgr.J02895 10.0kb downstream 10.0kb downstream 10000 false Chr10: 34452238-34462237 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.99374 0.0 14.6457    
cufflinks 0.438412 0.0 1.41145 Low Low
cufflinks 3.86716 0.0 9.87049    
cufflinks 0.772636 0.0 2.31788    
cufflinks 0.449842 0.0 1.44965 Low  
cufflinks 11.5499 0.0 26.6102   High

0 Strain