Gene : Eucgr.K00382 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  296
Name:  ? Eucgr.K00382 Secondary Identifier:  ? PAC:32066210
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00382 0.5kb upstream 0.5kb upstream 2762 true Chr11: 3473419-3476180 Eucalyptus grandis
Eucgr.K00382 0.5kb upstream 0.5kb upstream 500 false Chr11: 3473419-3473918 Eucalyptus grandis
Eucgr.K00382 0.5kb downstream 0.5kb downstream 2762 true Chr11: 3473919-3476680 Eucalyptus grandis
Eucgr.K00382 0.5kb downstream 0.5kb downstream 500 false Chr11: 3476181-3476680 Eucalyptus grandis
Eucgr.K00382 1.0kb upstream 1.0kb upstream 3262 true Chr11: 3472919-3476180 Eucalyptus grandis
Eucgr.K00382 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3472919-3473918 Eucalyptus grandis
Eucgr.K00382 1.0kb downstream 1.0kb downstream 3262 true Chr11: 3473919-3477180 Eucalyptus grandis
Eucgr.K00382 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3476181-3477180 Eucalyptus grandis
Eucgr.K00382 2.0kb upstream 2.0kb upstream 4262 true Chr11: 3471919-3476180 Eucalyptus grandis
Eucgr.K00382 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3471919-3473918 Eucalyptus grandis
Eucgr.K00382 2.0kb downstream 2.0kb downstream 4262 true Chr11: 3473919-3478180 Eucalyptus grandis
Eucgr.K00382 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3476181-3478180 Eucalyptus grandis
Eucgr.K00382 5.0kb upstream 5.0kb upstream 7262 true Chr11: 3468919-3476180 Eucalyptus grandis
Eucgr.K00382 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3468919-3473918 Eucalyptus grandis
Eucgr.K00382 5.0kb downstream 5.0kb downstream 7262 true Chr11: 3473919-3481180 Eucalyptus grandis
Eucgr.K00382 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3476181-3481180 Eucalyptus grandis
Eucgr.K00382 10.0kb upstream 10.0kb upstream 12262 true Chr11: 3463919-3476180 Eucalyptus grandis
Eucgr.K00382 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3463919-3473918 Eucalyptus grandis
Eucgr.K00382 10.0kb downstream 10.0kb downstream 12262 true Chr11: 3473919-3486180 Eucalyptus grandis
Eucgr.K00382 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3476181-3486180 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060522 5270 Rosid View MSA
123738847 5271 Pentapetalae View MSA
122790244 5272 Eudicot View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.30767 0.0 10.2827    
cufflinks 0.781325 0.0 2.21282 Low Low
cufflinks 3.06694 0.0 7.54946    
cufflinks 2.4833 0.0 6.22614    
cufflinks 1.27064 0.0 3.4315    
cufflinks 8.86837 0.0 20.029   High

0 Strain