Gene : Eucgr.K00203 E. grandis v2.0
Defline:  (1 of 15) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  143
Name:  ? Eucgr.K00203 Secondary Identifier:  ? PAC:32068086
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00203 0.5kb upstream 0.5kb upstream 9222 true Chr11: 1525975-1535196 Eucalyptus grandis
Eucgr.K00203 0.5kb upstream 0.5kb upstream 500 false Chr11: 1534697-1535196 Eucalyptus grandis
Eucgr.K00203 0.5kb downstream 0.5kb downstream 9222 true Chr11: 1525475-1534696 Eucalyptus grandis
Eucgr.K00203 0.5kb downstream 0.5kb downstream 500 false Chr11: 1525475-1525974 Eucalyptus grandis
Eucgr.K00203 1.0kb upstream 1.0kb upstream 9722 true Chr11: 1525975-1535696 Eucalyptus grandis
Eucgr.K00203 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1534697-1535696 Eucalyptus grandis
Eucgr.K00203 1.0kb downstream 1.0kb downstream 9722 true Chr11: 1524975-1534696 Eucalyptus grandis
Eucgr.K00203 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1524975-1525974 Eucalyptus grandis
Eucgr.K00203 2.0kb upstream 2.0kb upstream 10722 true Chr11: 1525975-1536696 Eucalyptus grandis
Eucgr.K00203 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1534697-1536696 Eucalyptus grandis
Eucgr.K00203 2.0kb downstream 2.0kb downstream 10722 true Chr11: 1523975-1534696 Eucalyptus grandis
Eucgr.K00203 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1523975-1525974 Eucalyptus grandis
Eucgr.K00203 5.0kb upstream 5.0kb upstream 13722 true Chr11: 1525975-1539696 Eucalyptus grandis
Eucgr.K00203 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1534697-1539696 Eucalyptus grandis
Eucgr.K00203 5.0kb downstream 5.0kb downstream 13722 true Chr11: 1520975-1534696 Eucalyptus grandis
Eucgr.K00203 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1520975-1525974 Eucalyptus grandis
Eucgr.K00203 10.0kb upstream 10.0kb upstream 18722 true Chr11: 1525975-1544696 Eucalyptus grandis
Eucgr.K00203 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1534697-1544696 Eucalyptus grandis
Eucgr.K00203 10.0kb downstream 10.0kb downstream 18722 true Chr11: 1515975-1534696 Eucalyptus grandis
Eucgr.K00203 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1515975-1525974 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.08033 0.0 17.2902    
cufflinks 1.02474 0.0 3.02574   Low
cufflinks 11.7097 0.0 27.2377    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.75956 0.0 4.91508    
cufflinks 11.9772 0.0 27.994    

0 Strain