Gene : Eucgr.K00175 E. grandis v2.0
Defline:  (1 of 1) PTHR12866:SF2 - UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 Genomic Order:  116
Name:  ? Eucgr.K00175 Secondary Identifier:  ? PAC:32069446
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00175 0.5kb upstream 0.5kb upstream 6226 true Chr11: 1139212-1145437 Eucalyptus grandis
Eucgr.K00175 0.5kb upstream 0.5kb upstream 500 false Chr11: 1144938-1145437 Eucalyptus grandis
Eucgr.K00175 0.5kb downstream 0.5kb downstream 6226 true Chr11: 1138712-1144937 Eucalyptus grandis
Eucgr.K00175 0.5kb downstream 0.5kb downstream 500 false Chr11: 1138712-1139211 Eucalyptus grandis
Eucgr.K00175 1.0kb upstream 1.0kb upstream 6726 true Chr11: 1139212-1145937 Eucalyptus grandis
Eucgr.K00175 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1144938-1145937 Eucalyptus grandis
Eucgr.K00175 1.0kb downstream 1.0kb downstream 6726 true Chr11: 1138212-1144937 Eucalyptus grandis
Eucgr.K00175 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1138212-1139211 Eucalyptus grandis
Eucgr.K00175 2.0kb upstream 2.0kb upstream 7726 true Chr11: 1139212-1146937 Eucalyptus grandis
Eucgr.K00175 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1144938-1146937 Eucalyptus grandis
Eucgr.K00175 2.0kb downstream 2.0kb downstream 7726 true Chr11: 1137212-1144937 Eucalyptus grandis
Eucgr.K00175 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1137212-1139211 Eucalyptus grandis
Eucgr.K00175 5.0kb upstream 5.0kb upstream 10726 true Chr11: 1139212-1149937 Eucalyptus grandis
Eucgr.K00175 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1144938-1149937 Eucalyptus grandis
Eucgr.K00175 5.0kb downstream 5.0kb downstream 10726 true Chr11: 1134212-1144937 Eucalyptus grandis
Eucgr.K00175 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1134212-1139211 Eucalyptus grandis
Eucgr.K00175 10.0kb upstream 10.0kb upstream 15726 true Chr11: 1139212-1154937 Eucalyptus grandis
Eucgr.K00175 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1144938-1154937 Eucalyptus grandis
Eucgr.K00175 10.0kb downstream 10.0kb downstream 15726 true Chr11: 1129212-1144937 Eucalyptus grandis
Eucgr.K00175 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1129212-1139211 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064028 5270 Rosid View MSA
123743996 5271 Pentapetalae View MSA
122789041 5272 Eudicot View MSA
122041877 5273 Angiosperm View MSA
121349462 5274 Embryophyte View MSA
123426307 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.2659 0.0 121.774 High  
cufflinks 56.2315 0.0 151.702 High  
cufflinks 43.6822 0.0 122.31 High  
cufflinks 68.4322 0.0 189.533 High High
cufflinks 44.1394 0.0 113.91 High  
cufflinks 43.8138 0.0 113.158 High  

0 Strain