Gene : Eucgr.K00110 E. grandis v2.0
Defline:  (1 of 3) PTHR11404:SF24 - SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Genomic Order:  54
Name:  ? Eucgr.K00110 Secondary Identifier:  ? PAC:32068002
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis DETOX1-PWY Eucalyptus grandis pathologic  
Egrandis DETOX1-PWY-1 Eucalyptus grandis pathologic  
Egrandis PWY-6854 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00110 0.5kb upstream 0.5kb upstream 6411 true Chr11: 702398-708808 Eucalyptus grandis
Eucgr.K00110 0.5kb upstream 0.5kb upstream 500 false Chr11: 708309-708808 Eucalyptus grandis
Eucgr.K00110 0.5kb downstream 0.5kb downstream 6411 true Chr11: 701898-708308 Eucalyptus grandis
Eucgr.K00110 0.5kb downstream 0.5kb downstream 500 false Chr11: 701898-702397 Eucalyptus grandis
Eucgr.K00110 1.0kb upstream 1.0kb upstream 6911 true Chr11: 702398-709308 Eucalyptus grandis
Eucgr.K00110 1.0kb upstream 1.0kb upstream 1000 false Chr11: 708309-709308 Eucalyptus grandis
Eucgr.K00110 1.0kb downstream 1.0kb downstream 6911 true Chr11: 701398-708308 Eucalyptus grandis
Eucgr.K00110 1.0kb downstream 1.0kb downstream 1000 false Chr11: 701398-702397 Eucalyptus grandis
Eucgr.K00110 2.0kb upstream 2.0kb upstream 7911 true Chr11: 702398-710308 Eucalyptus grandis
Eucgr.K00110 2.0kb upstream 2.0kb upstream 2000 false Chr11: 708309-710308 Eucalyptus grandis
Eucgr.K00110 2.0kb downstream 2.0kb downstream 7911 true Chr11: 700398-708308 Eucalyptus grandis
Eucgr.K00110 2.0kb downstream 2.0kb downstream 2000 false Chr11: 700398-702397 Eucalyptus grandis
Eucgr.K00110 5.0kb upstream 5.0kb upstream 10911 true Chr11: 702398-713308 Eucalyptus grandis
Eucgr.K00110 5.0kb upstream 5.0kb upstream 5000 false Chr11: 708309-713308 Eucalyptus grandis
Eucgr.K00110 5.0kb downstream 5.0kb downstream 10911 true Chr11: 697398-708308 Eucalyptus grandis
Eucgr.K00110 5.0kb downstream 5.0kb downstream 5000 false Chr11: 697398-702397 Eucalyptus grandis
Eucgr.K00110 10.0kb upstream 10.0kb upstream 15911 true Chr11: 702398-718308 Eucalyptus grandis
Eucgr.K00110 10.0kb upstream 10.0kb upstream 10000 false Chr11: 708309-718308 Eucalyptus grandis
Eucgr.K00110 10.0kb downstream 10.0kb downstream 15911 true Chr11: 692398-708308 Eucalyptus grandis
Eucgr.K00110 10.0kb downstream 10.0kb downstream 10000 false Chr11: 692398-702397 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.9394 0.0 99.5785 High  
cufflinks 212.301 0.0 758.406 High High
cufflinks 28.4914 0.0 76.5007 High Low
cufflinks 91.1757 0.0 283.362 High  
cufflinks 74.3502 0.0 245.115 High  
cufflinks 73.7298 0.0 216.019 High  

0 Strain