Gene : Eucgr.K01354 E. grandis v2.0
Defline:  (1 of 1) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  1137
Name:  ? Eucgr.K01354 Secondary Identifier:  ? PAC:32068536
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CHLOROPHYLL-SYN Eucalyptus grandis pathologic  
Egrandis HEME-BIOSYNTHESIS-II Eucalyptus grandis pathologic  
Egrandis PWY-5918 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01354 0.5kb upstream 0.5kb upstream 4451 true Chr11: 16866892-16871342 Eucalyptus grandis
Eucgr.K01354 0.5kb upstream 0.5kb upstream 500 false Chr11: 16870843-16871342 Eucalyptus grandis
Eucgr.K01354 0.5kb downstream 0.5kb downstream 4451 true Chr11: 16866392-16870842 Eucalyptus grandis
Eucgr.K01354 0.5kb downstream 0.5kb downstream 500 false Chr11: 16866392-16866891 Eucalyptus grandis
Eucgr.K01354 1.0kb upstream 1.0kb upstream 4951 true Chr11: 16866892-16871842 Eucalyptus grandis
Eucgr.K01354 1.0kb upstream 1.0kb upstream 1000 false Chr11: 16870843-16871842 Eucalyptus grandis
Eucgr.K01354 1.0kb downstream 1.0kb downstream 4951 true Chr11: 16865892-16870842 Eucalyptus grandis
Eucgr.K01354 1.0kb downstream 1.0kb downstream 1000 false Chr11: 16865892-16866891 Eucalyptus grandis
Eucgr.K01354 2.0kb upstream 2.0kb upstream 5951 true Chr11: 16866892-16872842 Eucalyptus grandis
Eucgr.K01354 2.0kb upstream 2.0kb upstream 2000 false Chr11: 16870843-16872842 Eucalyptus grandis
Eucgr.K01354 2.0kb downstream 2.0kb downstream 5951 true Chr11: 16864892-16870842 Eucalyptus grandis
Eucgr.K01354 2.0kb downstream 2.0kb downstream 2000 false Chr11: 16864892-16866891 Eucalyptus grandis
Eucgr.K01354 5.0kb upstream 5.0kb upstream 8951 true Chr11: 16866892-16875842 Eucalyptus grandis
Eucgr.K01354 5.0kb upstream 5.0kb upstream 5000 false Chr11: 16870843-16875842 Eucalyptus grandis
Eucgr.K01354 5.0kb downstream 5.0kb downstream 8951 true Chr11: 16861892-16870842 Eucalyptus grandis
Eucgr.K01354 5.0kb downstream 5.0kb downstream 5000 false Chr11: 16861892-16866891 Eucalyptus grandis
Eucgr.K01354 10.0kb upstream 10.0kb upstream 13951 true Chr11: 16866892-16880842 Eucalyptus grandis
Eucgr.K01354 10.0kb upstream 10.0kb upstream 10000 false Chr11: 16870843-16880842 Eucalyptus grandis
Eucgr.K01354 10.0kb downstream 10.0kb downstream 13951 true Chr11: 16856892-16870842 Eucalyptus grandis
Eucgr.K01354 10.0kb downstream 10.0kb downstream 10000 false Chr11: 16856892-16866891 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.9874 0.0 129.498 High  
cufflinks 62.4662 0.0 139.732 High High
cufflinks 37.7565 0.0 83.52 High  
cufflinks 22.3451 0.0 49.6668   Low
cufflinks 18.7691 0.0 41.9695   Low
cufflinks 47.0373 0.0 104.549 High  

0 Strain