Gene : Eucgr.K01171 E. grandis v2.0
Defline:  (1 of 1) PTHR11266:SF37 - EXPRESSED PROTEIN Genomic Order:  976
Name:  ? Eucgr.K01171 Secondary Identifier:  ? PAC:32067740
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01171 0.5kb upstream 0.5kb upstream 1166 true Chr11: 15127352-15128517 Eucalyptus grandis
Eucgr.K01171 0.5kb upstream 0.5kb upstream 500 false Chr11: 15128018-15128517 Eucalyptus grandis
Eucgr.K01171 0.5kb downstream 0.5kb downstream 1166 true Chr11: 15126852-15128017 Eucalyptus grandis
Eucgr.K01171 0.5kb downstream 0.5kb downstream 500 false Chr11: 15126852-15127351 Eucalyptus grandis
Eucgr.K01171 1.0kb upstream 1.0kb upstream 1666 true Chr11: 15127352-15129017 Eucalyptus grandis
Eucgr.K01171 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15128018-15129017 Eucalyptus grandis
Eucgr.K01171 1.0kb downstream 1.0kb downstream 1666 true Chr11: 15126352-15128017 Eucalyptus grandis
Eucgr.K01171 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15126352-15127351 Eucalyptus grandis
Eucgr.K01171 2.0kb upstream 2.0kb upstream 2666 true Chr11: 15127352-15130017 Eucalyptus grandis
Eucgr.K01171 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15128018-15130017 Eucalyptus grandis
Eucgr.K01171 2.0kb downstream 2.0kb downstream 2666 true Chr11: 15125352-15128017 Eucalyptus grandis
Eucgr.K01171 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15125352-15127351 Eucalyptus grandis
Eucgr.K01171 5.0kb upstream 5.0kb upstream 5666 true Chr11: 15127352-15133017 Eucalyptus grandis
Eucgr.K01171 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15128018-15133017 Eucalyptus grandis
Eucgr.K01171 5.0kb downstream 5.0kb downstream 5666 true Chr11: 15122352-15128017 Eucalyptus grandis
Eucgr.K01171 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15122352-15127351 Eucalyptus grandis
Eucgr.K01171 10.0kb upstream 10.0kb upstream 10666 true Chr11: 15127352-15138017 Eucalyptus grandis
Eucgr.K01171 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15128018-15138017 Eucalyptus grandis
Eucgr.K01171 10.0kb downstream 10.0kb downstream 10666 true Chr11: 15117352-15128017 Eucalyptus grandis
Eucgr.K01171 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15117352-15127351 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124048809 5270 Rosid Singleton cluster - no MSA
123751780 5271 Pentapetalae View MSA
122796884 5272 Eudicot View MSA
122051343 5273 Angiosperm View MSA
121350942 5274 Embryophyte View MSA
123428334 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.779 0.0 51.7412    
cufflinks 3.88641 0.0 12.5121   Low
cufflinks 14.4031 0.0 40.9556    
cufflinks 11.9292 0.0 34.493    
cufflinks 15.5037 0.0 43.3074    
cufflinks 23.0525 0.0 63.341    

0 Strain