Gene : Eucgr.K01128 E. grandis v2.0
Defline:  (1 of 2) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  946
Name:  ? Eucgr.K01128 Secondary Identifier:  ? PAC:32066594
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01128 0.5kb upstream 0.5kb upstream 4786 true Chr11: 14370412-14375197 Eucalyptus grandis
Eucgr.K01128 0.5kb upstream 0.5kb upstream 500 false Chr11: 14370412-14370911 Eucalyptus grandis
Eucgr.K01128 0.5kb downstream 0.5kb downstream 4786 true Chr11: 14370912-14375697 Eucalyptus grandis
Eucgr.K01128 0.5kb downstream 0.5kb downstream 500 false Chr11: 14375198-14375697 Eucalyptus grandis
Eucgr.K01128 1.0kb upstream 1.0kb upstream 5286 true Chr11: 14369912-14375197 Eucalyptus grandis
Eucgr.K01128 1.0kb upstream 1.0kb upstream 1000 false Chr11: 14369912-14370911 Eucalyptus grandis
Eucgr.K01128 1.0kb downstream 1.0kb downstream 5286 true Chr11: 14370912-14376197 Eucalyptus grandis
Eucgr.K01128 1.0kb downstream 1.0kb downstream 1000 false Chr11: 14375198-14376197 Eucalyptus grandis
Eucgr.K01128 2.0kb upstream 2.0kb upstream 6286 true Chr11: 14368912-14375197 Eucalyptus grandis
Eucgr.K01128 2.0kb upstream 2.0kb upstream 2000 false Chr11: 14368912-14370911 Eucalyptus grandis
Eucgr.K01128 2.0kb downstream 2.0kb downstream 6286 true Chr11: 14370912-14377197 Eucalyptus grandis
Eucgr.K01128 2.0kb downstream 2.0kb downstream 2000 false Chr11: 14375198-14377197 Eucalyptus grandis
Eucgr.K01128 5.0kb upstream 5.0kb upstream 9286 true Chr11: 14365912-14375197 Eucalyptus grandis
Eucgr.K01128 5.0kb upstream 5.0kb upstream 5000 false Chr11: 14365912-14370911 Eucalyptus grandis
Eucgr.K01128 5.0kb downstream 5.0kb downstream 9286 true Chr11: 14370912-14380197 Eucalyptus grandis
Eucgr.K01128 5.0kb downstream 5.0kb downstream 5000 false Chr11: 14375198-14380197 Eucalyptus grandis
Eucgr.K01128 10.0kb upstream 10.0kb upstream 14286 true Chr11: 14360912-14375197 Eucalyptus grandis
Eucgr.K01128 10.0kb upstream 10.0kb upstream 10000 false Chr11: 14360912-14370911 Eucalyptus grandis
Eucgr.K01128 10.0kb downstream 10.0kb downstream 14286 true Chr11: 14370912-14385197 Eucalyptus grandis
Eucgr.K01128 10.0kb downstream 10.0kb downstream 10000 false Chr11: 14375198-14385197 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.670625 0.0 2.48339   Low
cufflinks 60.4879 0.0 136.82 High  
cufflinks 6.56266 0.0 16.9528    
cufflinks 30.3507 0.0 69.8686    
cufflinks 92.3892 0.0 214.796 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain