Gene : Eucgr.K01870 E. grandis v2.0
Defline:  (1 of 1) PTHR14969 - SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE Genomic Order:  1575
Name:  ? Eucgr.K01870 Secondary Identifier:  ? PAC:32067703
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRIGLSYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01870 0.5kb upstream 0.5kb upstream 5960 true Chr11: 24527941-24533900 Eucalyptus grandis
Eucgr.K01870 0.5kb upstream 0.5kb upstream 500 false Chr11: 24533401-24533900 Eucalyptus grandis
Eucgr.K01870 0.5kb downstream 0.5kb downstream 5960 true Chr11: 24527441-24533400 Eucalyptus grandis
Eucgr.K01870 0.5kb downstream 0.5kb downstream 500 false Chr11: 24527441-24527940 Eucalyptus grandis
Eucgr.K01870 1.0kb upstream 1.0kb upstream 6460 true Chr11: 24527941-24534400 Eucalyptus grandis
Eucgr.K01870 1.0kb upstream 1.0kb upstream 1000 false Chr11: 24533401-24534400 Eucalyptus grandis
Eucgr.K01870 1.0kb downstream 1.0kb downstream 6460 true Chr11: 24526941-24533400 Eucalyptus grandis
Eucgr.K01870 1.0kb downstream 1.0kb downstream 1000 false Chr11: 24526941-24527940 Eucalyptus grandis
Eucgr.K01870 2.0kb upstream 2.0kb upstream 7460 true Chr11: 24527941-24535400 Eucalyptus grandis
Eucgr.K01870 2.0kb upstream 2.0kb upstream 2000 false Chr11: 24533401-24535400 Eucalyptus grandis
Eucgr.K01870 2.0kb downstream 2.0kb downstream 7460 true Chr11: 24525941-24533400 Eucalyptus grandis
Eucgr.K01870 2.0kb downstream 2.0kb downstream 2000 false Chr11: 24525941-24527940 Eucalyptus grandis
Eucgr.K01870 5.0kb upstream 5.0kb upstream 10460 true Chr11: 24527941-24538400 Eucalyptus grandis
Eucgr.K01870 5.0kb upstream 5.0kb upstream 5000 false Chr11: 24533401-24538400 Eucalyptus grandis
Eucgr.K01870 5.0kb downstream 5.0kb downstream 10460 true Chr11: 24522941-24533400 Eucalyptus grandis
Eucgr.K01870 5.0kb downstream 5.0kb downstream 5000 false Chr11: 24522941-24527940 Eucalyptus grandis
Eucgr.K01870 10.0kb upstream 10.0kb upstream 15460 true Chr11: 24527941-24543400 Eucalyptus grandis
Eucgr.K01870 10.0kb upstream 10.0kb upstream 10000 false Chr11: 24533401-24543400 Eucalyptus grandis
Eucgr.K01870 10.0kb downstream 10.0kb downstream 15460 true Chr11: 24517941-24533400 Eucalyptus grandis
Eucgr.K01870 10.0kb downstream 10.0kb downstream 10000 false Chr11: 24517941-24527940 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.3467 0.0 64.9726 High  
cufflinks 63.4745 0.0 141.988 High  
cufflinks 30.8128 0.0 68.1788 High  
cufflinks 146.51 0.0 346.169 High High
cufflinks 84.825 0.0 192.291 High  
cufflinks 22.6861 0.0 50.5105   Low

0 Strain