Gene : Eucgr.K01811 E. grandis v2.0
Defline:  (1 of 1) PTHR19376:SF11 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1 Genomic Order:  1522
Name:  ? Eucgr.K01811 Secondary Identifier:  ? PAC:32067980
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01811 0.5kb upstream 0.5kb upstream 20460 true Chr11: 23646246-23666705 Eucalyptus grandis
Eucgr.K01811 0.5kb upstream 0.5kb upstream 500 false Chr11: 23646246-23646745 Eucalyptus grandis
Eucgr.K01811 0.5kb downstream 0.5kb downstream 20460 true Chr11: 23646746-23667205 Eucalyptus grandis
Eucgr.K01811 0.5kb downstream 0.5kb downstream 500 false Chr11: 23666706-23667205 Eucalyptus grandis
Eucgr.K01811 1.0kb upstream 1.0kb upstream 20960 true Chr11: 23645746-23666705 Eucalyptus grandis
Eucgr.K01811 1.0kb upstream 1.0kb upstream 1000 false Chr11: 23645746-23646745 Eucalyptus grandis
Eucgr.K01811 1.0kb downstream 1.0kb downstream 20960 true Chr11: 23646746-23667705 Eucalyptus grandis
Eucgr.K01811 1.0kb downstream 1.0kb downstream 1000 false Chr11: 23666706-23667705 Eucalyptus grandis
Eucgr.K01811 2.0kb upstream 2.0kb upstream 21960 true Chr11: 23644746-23666705 Eucalyptus grandis
Eucgr.K01811 2.0kb upstream 2.0kb upstream 2000 false Chr11: 23644746-23646745 Eucalyptus grandis
Eucgr.K01811 2.0kb downstream 2.0kb downstream 21960 true Chr11: 23646746-23668705 Eucalyptus grandis
Eucgr.K01811 2.0kb downstream 2.0kb downstream 2000 false Chr11: 23666706-23668705 Eucalyptus grandis
Eucgr.K01811 5.0kb upstream 5.0kb upstream 24960 true Chr11: 23641746-23666705 Eucalyptus grandis
Eucgr.K01811 5.0kb upstream 5.0kb upstream 5000 false Chr11: 23641746-23646745 Eucalyptus grandis
Eucgr.K01811 5.0kb downstream 5.0kb downstream 24960 true Chr11: 23646746-23671705 Eucalyptus grandis
Eucgr.K01811 5.0kb downstream 5.0kb downstream 5000 false Chr11: 23666706-23671705 Eucalyptus grandis
Eucgr.K01811 10.0kb upstream 10.0kb upstream 29960 true Chr11: 23636746-23666705 Eucalyptus grandis
Eucgr.K01811 10.0kb upstream 10.0kb upstream 10000 false Chr11: 23636746-23646745 Eucalyptus grandis
Eucgr.K01811 10.0kb downstream 10.0kb downstream 29960 true Chr11: 23646746-23676705 Eucalyptus grandis
Eucgr.K01811 10.0kb downstream 10.0kb downstream 10000 false Chr11: 23666706-23676705 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068682 5270 Rosid View MSA
123740783 5271 Pentapetalae View MSA
122786544 5272 Eudicot View MSA
122045680 5273 Angiosperm View MSA
121344248 5274 Embryophyte View MSA
123424891 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.94871 0.0 9.02139    
cufflinks 1.68148 0.0 4.58146   Low
cufflinks 3.85316 0.0 8.8442    
cufflinks 2.56396 0.0 6.78882    
cufflinks 2.90938 0.0 7.04045    
cufflinks 4.53007 0.0 10.6521   High

0 Strain