Gene : Eucgr.K01683 E. grandis v2.0
Defline:  (1 of 1) PTHR22763:SF44 - E3 UBIQUITIN LIGASE Genomic Order:  1338
Name:  ? Eucgr.K01683 Secondary Identifier:  ? PAC:32069361
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01683 0.5kb upstream 0.5kb upstream 5477 true Chr11: 19525845-19531321 Eucalyptus grandis
Eucgr.K01683 0.5kb upstream 0.5kb upstream 500 false Chr11: 19525845-19526344 Eucalyptus grandis
Eucgr.K01683 0.5kb downstream 0.5kb downstream 5477 true Chr11: 19526345-19531821 Eucalyptus grandis
Eucgr.K01683 0.5kb downstream 0.5kb downstream 500 false Chr11: 19531322-19531821 Eucalyptus grandis
Eucgr.K01683 1.0kb upstream 1.0kb upstream 5977 true Chr11: 19525345-19531321 Eucalyptus grandis
Eucgr.K01683 1.0kb upstream 1.0kb upstream 1000 false Chr11: 19525345-19526344 Eucalyptus grandis
Eucgr.K01683 1.0kb downstream 1.0kb downstream 5977 true Chr11: 19526345-19532321 Eucalyptus grandis
Eucgr.K01683 1.0kb downstream 1.0kb downstream 1000 false Chr11: 19531322-19532321 Eucalyptus grandis
Eucgr.K01683 2.0kb upstream 2.0kb upstream 6977 true Chr11: 19524345-19531321 Eucalyptus grandis
Eucgr.K01683 2.0kb upstream 2.0kb upstream 2000 false Chr11: 19524345-19526344 Eucalyptus grandis
Eucgr.K01683 2.0kb downstream 2.0kb downstream 6977 true Chr11: 19526345-19533321 Eucalyptus grandis
Eucgr.K01683 2.0kb downstream 2.0kb downstream 2000 false Chr11: 19531322-19533321 Eucalyptus grandis
Eucgr.K01683 5.0kb upstream 5.0kb upstream 9977 true Chr11: 19521345-19531321 Eucalyptus grandis
Eucgr.K01683 5.0kb upstream 5.0kb upstream 5000 false Chr11: 19521345-19526344 Eucalyptus grandis
Eucgr.K01683 5.0kb downstream 5.0kb downstream 9977 true Chr11: 19526345-19536321 Eucalyptus grandis
Eucgr.K01683 5.0kb downstream 5.0kb downstream 5000 false Chr11: 19531322-19536321 Eucalyptus grandis
Eucgr.K01683 10.0kb upstream 10.0kb upstream 14977 true Chr11: 19516345-19531321 Eucalyptus grandis
Eucgr.K01683 10.0kb upstream 10.0kb upstream 10000 false Chr11: 19516345-19526344 Eucalyptus grandis
Eucgr.K01683 10.0kb downstream 10.0kb downstream 14977 true Chr11: 19526345-19541321 Eucalyptus grandis
Eucgr.K01683 10.0kb downstream 10.0kb downstream 10000 false Chr11: 19531322-19541321 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070952 5270 Rosid View MSA
123745999 5271 Pentapetalae View MSA
122790564 5272 Eudicot View MSA
122048435 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.7644 0.0 66.7063   High
cufflinks 20.6896 0.0 47.3513    
cufflinks 22.5194 0.0 51.4764    
cufflinks 17.8394 0.0 48.3727   Low
cufflinks 22.3953 0.0 51.1311    
cufflinks 21.8689 0.0 50.3076    

0 Strain