Gene : Eucgr.K01483 E. grandis v2.0
Defline:  (1 of 2) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  1234
Name:  ? Eucgr.K01483 Secondary Identifier:  ? PAC:32069529
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K01483 0.5kb upstream 0.5kb upstream 4111 true Chr11: 18222905-18227015 Eucalyptus grandis
Eucgr.K01483 0.5kb upstream 0.5kb upstream 500 false Chr11: 18226516-18227015 Eucalyptus grandis
Eucgr.K01483 0.5kb downstream 0.5kb downstream 4111 true Chr11: 18222405-18226515 Eucalyptus grandis
Eucgr.K01483 0.5kb downstream 0.5kb downstream 500 false Chr11: 18222405-18222904 Eucalyptus grandis
Eucgr.K01483 1.0kb upstream 1.0kb upstream 4611 true Chr11: 18222905-18227515 Eucalyptus grandis
Eucgr.K01483 1.0kb upstream 1.0kb upstream 1000 false Chr11: 18226516-18227515 Eucalyptus grandis
Eucgr.K01483 1.0kb downstream 1.0kb downstream 4611 true Chr11: 18221905-18226515 Eucalyptus grandis
Eucgr.K01483 1.0kb downstream 1.0kb downstream 1000 false Chr11: 18221905-18222904 Eucalyptus grandis
Eucgr.K01483 2.0kb upstream 2.0kb upstream 5611 true Chr11: 18222905-18228515 Eucalyptus grandis
Eucgr.K01483 2.0kb upstream 2.0kb upstream 2000 false Chr11: 18226516-18228515 Eucalyptus grandis
Eucgr.K01483 2.0kb downstream 2.0kb downstream 5611 true Chr11: 18220905-18226515 Eucalyptus grandis
Eucgr.K01483 2.0kb downstream 2.0kb downstream 2000 false Chr11: 18220905-18222904 Eucalyptus grandis
Eucgr.K01483 5.0kb upstream 5.0kb upstream 8611 true Chr11: 18222905-18231515 Eucalyptus grandis
Eucgr.K01483 5.0kb upstream 5.0kb upstream 5000 false Chr11: 18226516-18231515 Eucalyptus grandis
Eucgr.K01483 5.0kb downstream 5.0kb downstream 8611 true Chr11: 18217905-18226515 Eucalyptus grandis
Eucgr.K01483 5.0kb downstream 5.0kb downstream 5000 false Chr11: 18217905-18222904 Eucalyptus grandis
Eucgr.K01483 10.0kb upstream 10.0kb upstream 13611 true Chr11: 18222905-18236515 Eucalyptus grandis
Eucgr.K01483 10.0kb upstream 10.0kb upstream 10000 false Chr11: 18226516-18236515 Eucalyptus grandis
Eucgr.K01483 10.0kb downstream 10.0kb downstream 13611 true Chr11: 18212905-18226515 Eucalyptus grandis
Eucgr.K01483 10.0kb downstream 10.0kb downstream 10000 false Chr11: 18212905-18222904 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.4189 0.0 19.2636    
cufflinks 15.3215 0.0 36.7166    
cufflinks 16.0883 0.0 38.5082    
cufflinks 19.8283 0.0 46.3672    
cufflinks 16.2122 0.0 38.7487    
cufflinks 4.3213 0.0 11.8736   Low

0 Strain