Gene : Eucgr.K02275 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1910
Name:  ? Eucgr.K02275 Secondary Identifier:  ? PAC:32066386
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02275 0.5kb upstream 0.5kb upstream 3810 true Chr11: 30602550-30606359 Eucalyptus grandis
Eucgr.K02275 0.5kb upstream 0.5kb upstream 500 false Chr11: 30602550-30603049 Eucalyptus grandis
Eucgr.K02275 0.5kb downstream 0.5kb downstream 3810 true Chr11: 30603050-30606859 Eucalyptus grandis
Eucgr.K02275 0.5kb downstream 0.5kb downstream 500 false Chr11: 30606360-30606859 Eucalyptus grandis
Eucgr.K02275 1.0kb upstream 1.0kb upstream 4310 true Chr11: 30602050-30606359 Eucalyptus grandis
Eucgr.K02275 1.0kb upstream 1.0kb upstream 1000 false Chr11: 30602050-30603049 Eucalyptus grandis
Eucgr.K02275 1.0kb downstream 1.0kb downstream 4310 true Chr11: 30603050-30607359 Eucalyptus grandis
Eucgr.K02275 1.0kb downstream 1.0kb downstream 1000 false Chr11: 30606360-30607359 Eucalyptus grandis
Eucgr.K02275 2.0kb upstream 2.0kb upstream 5310 true Chr11: 30601050-30606359 Eucalyptus grandis
Eucgr.K02275 2.0kb upstream 2.0kb upstream 2000 false Chr11: 30601050-30603049 Eucalyptus grandis
Eucgr.K02275 2.0kb downstream 2.0kb downstream 5310 true Chr11: 30603050-30608359 Eucalyptus grandis
Eucgr.K02275 2.0kb downstream 2.0kb downstream 2000 false Chr11: 30606360-30608359 Eucalyptus grandis
Eucgr.K02275 5.0kb upstream 5.0kb upstream 8310 true Chr11: 30598050-30606359 Eucalyptus grandis
Eucgr.K02275 5.0kb upstream 5.0kb upstream 5000 false Chr11: 30598050-30603049 Eucalyptus grandis
Eucgr.K02275 5.0kb downstream 5.0kb downstream 8310 true Chr11: 30603050-30611359 Eucalyptus grandis
Eucgr.K02275 5.0kb downstream 5.0kb downstream 5000 false Chr11: 30606360-30611359 Eucalyptus grandis
Eucgr.K02275 10.0kb upstream 10.0kb upstream 13310 true Chr11: 30593050-30606359 Eucalyptus grandis
Eucgr.K02275 10.0kb upstream 10.0kb upstream 10000 false Chr11: 30593050-30603049 Eucalyptus grandis
Eucgr.K02275 10.0kb downstream 10.0kb downstream 13310 true Chr11: 30603050-30616359 Eucalyptus grandis
Eucgr.K02275 10.0kb downstream 10.0kb downstream 10000 false Chr11: 30606360-30616359 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041181 5273 Angiosperm View MSA
124063863 5270 Rosid View MSA
123748869 5271 Pentapetalae View MSA
122792190 5272 Eudicot View MSA
121309811 5274 Embryophyte View MSA
123347464 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.55943 0.0 21.2217    
cufflinks 6.53364 0.0 15.1599    
cufflinks 8.38289 0.0 22.6155    
cufflinks 18.1612 0.0 46.6942   High
cufflinks 8.4423 0.0 23.8281    
cufflinks 8.30433 0.0 19.1445    

0 Strain