Gene : Eucgr.K02270 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1905
Name:  ? Eucgr.K02270 Secondary Identifier:  ? PAC:32067577
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02270 0.5kb upstream 0.5kb upstream 2680 true Chr11: 30565595-30568274 Eucalyptus grandis
Eucgr.K02270 0.5kb upstream 0.5kb upstream 500 false Chr11: 30567775-30568274 Eucalyptus grandis
Eucgr.K02270 0.5kb downstream 0.5kb downstream 2680 true Chr11: 30565095-30567774 Eucalyptus grandis
Eucgr.K02270 0.5kb downstream 0.5kb downstream 500 false Chr11: 30565095-30565594 Eucalyptus grandis
Eucgr.K02270 1.0kb upstream 1.0kb upstream 3180 true Chr11: 30565595-30568774 Eucalyptus grandis
Eucgr.K02270 1.0kb upstream 1.0kb upstream 1000 false Chr11: 30567775-30568774 Eucalyptus grandis
Eucgr.K02270 1.0kb downstream 1.0kb downstream 3180 true Chr11: 30564595-30567774 Eucalyptus grandis
Eucgr.K02270 1.0kb downstream 1.0kb downstream 1000 false Chr11: 30564595-30565594 Eucalyptus grandis
Eucgr.K02270 2.0kb upstream 2.0kb upstream 4180 true Chr11: 30565595-30569774 Eucalyptus grandis
Eucgr.K02270 2.0kb upstream 2.0kb upstream 2000 false Chr11: 30567775-30569774 Eucalyptus grandis
Eucgr.K02270 2.0kb downstream 2.0kb downstream 4180 true Chr11: 30563595-30567774 Eucalyptus grandis
Eucgr.K02270 2.0kb downstream 2.0kb downstream 2000 false Chr11: 30563595-30565594 Eucalyptus grandis
Eucgr.K02270 5.0kb upstream 5.0kb upstream 7180 true Chr11: 30565595-30572774 Eucalyptus grandis
Eucgr.K02270 5.0kb upstream 5.0kb upstream 5000 false Chr11: 30567775-30572774 Eucalyptus grandis
Eucgr.K02270 5.0kb downstream 5.0kb downstream 7180 true Chr11: 30560595-30567774 Eucalyptus grandis
Eucgr.K02270 5.0kb downstream 5.0kb downstream 5000 false Chr11: 30560595-30565594 Eucalyptus grandis
Eucgr.K02270 10.0kb upstream 10.0kb upstream 12180 true Chr11: 30565595-30577774 Eucalyptus grandis
Eucgr.K02270 10.0kb upstream 10.0kb upstream 10000 false Chr11: 30567775-30577774 Eucalyptus grandis
Eucgr.K02270 10.0kb downstream 10.0kb downstream 12180 true Chr11: 30555595-30567774 Eucalyptus grandis
Eucgr.K02270 10.0kb downstream 10.0kb downstream 10000 false Chr11: 30555595-30565594 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068854 5270 Rosid View MSA
123739048 5271 Pentapetalae View MSA
122788284 5272 Eudicot View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53187 0.0 4.15627   Low
cufflinks 2.23147 0.0 5.80948    
cufflinks 1.90543 0.0 5.05355    
cufflinks 1.74942 0.0 4.65741    
cufflinks 2.97243 0.0 7.55456   High
cufflinks 2.77879 0.0 7.13399   High

0 Strain