Gene : Eucgr.K02172 E. grandis v2.0
Defline:  (1 of 1) KOG4159 - Predicted E3 ubiquitin ligase Genomic Order:  1813
Name:  ? Eucgr.K02172 Secondary Identifier:  ? PAC:32069705
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02172 0.5kb upstream 0.5kb upstream 5906 true Chr11: 29588812-29594717 Eucalyptus grandis
Eucgr.K02172 0.5kb upstream 0.5kb upstream 500 false Chr11: 29594218-29594717 Eucalyptus grandis
Eucgr.K02172 0.5kb downstream 0.5kb downstream 5906 true Chr11: 29588312-29594217 Eucalyptus grandis
Eucgr.K02172 0.5kb downstream 0.5kb downstream 500 false Chr11: 29588312-29588811 Eucalyptus grandis
Eucgr.K02172 1.0kb upstream 1.0kb upstream 6406 true Chr11: 29588812-29595217 Eucalyptus grandis
Eucgr.K02172 1.0kb upstream 1.0kb upstream 1000 false Chr11: 29594218-29595217 Eucalyptus grandis
Eucgr.K02172 1.0kb downstream 1.0kb downstream 6406 true Chr11: 29587812-29594217 Eucalyptus grandis
Eucgr.K02172 1.0kb downstream 1.0kb downstream 1000 false Chr11: 29587812-29588811 Eucalyptus grandis
Eucgr.K02172 2.0kb upstream 2.0kb upstream 7406 true Chr11: 29588812-29596217 Eucalyptus grandis
Eucgr.K02172 2.0kb upstream 2.0kb upstream 2000 false Chr11: 29594218-29596217 Eucalyptus grandis
Eucgr.K02172 2.0kb downstream 2.0kb downstream 7406 true Chr11: 29586812-29594217 Eucalyptus grandis
Eucgr.K02172 2.0kb downstream 2.0kb downstream 2000 false Chr11: 29586812-29588811 Eucalyptus grandis
Eucgr.K02172 5.0kb upstream 5.0kb upstream 10406 true Chr11: 29588812-29599217 Eucalyptus grandis
Eucgr.K02172 5.0kb upstream 5.0kb upstream 5000 false Chr11: 29594218-29599217 Eucalyptus grandis
Eucgr.K02172 5.0kb downstream 5.0kb downstream 10406 true Chr11: 29583812-29594217 Eucalyptus grandis
Eucgr.K02172 5.0kb downstream 5.0kb downstream 5000 false Chr11: 29583812-29588811 Eucalyptus grandis
Eucgr.K02172 10.0kb upstream 10.0kb upstream 15406 true Chr11: 29588812-29604217 Eucalyptus grandis
Eucgr.K02172 10.0kb upstream 10.0kb upstream 10000 false Chr11: 29594218-29604217 Eucalyptus grandis
Eucgr.K02172 10.0kb downstream 10.0kb downstream 15406 true Chr11: 29578812-29594217 Eucalyptus grandis
Eucgr.K02172 10.0kb downstream 10.0kb downstream 10000 false Chr11: 29578812-29588811 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060763 5270 Rosid View MSA
123743131 5271 Pentapetalae View MSA
122792219 5272 Eudicot View MSA
122046771 5273 Angiosperm View MSA
121351616 5274 Embryophyte View MSA
123427773 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.82057 0.0 17.9826   Low
cufflinks 20.3283 0.0 45.6829   High
cufflinks 12.0937 0.0 30.6841    
cufflinks 18.9569 0.0 48.3803   High
cufflinks 12.2133 0.0 28.0812    
cufflinks 12.9401 0.0 32.4745    

0 Strain