Gene : Eucgr.K02142 E. grandis v2.0
Defline:  (1 of 3) PTHR33159:SF6 - RPM1-INTERACTING PROTEIN 4 Genomic Order:  1789
Name:  ? Eucgr.K02142 Secondary Identifier:  ? PAC:32066148
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02142 0.5kb upstream 0.5kb upstream 4066 true Chr11: 29246546-29250611 Eucalyptus grandis
Eucgr.K02142 0.5kb upstream 0.5kb upstream 500 false Chr11: 29250112-29250611 Eucalyptus grandis
Eucgr.K02142 0.5kb downstream 0.5kb downstream 4066 true Chr11: 29246046-29250111 Eucalyptus grandis
Eucgr.K02142 0.5kb downstream 0.5kb downstream 500 false Chr11: 29246046-29246545 Eucalyptus grandis
Eucgr.K02142 1.0kb upstream 1.0kb upstream 4566 true Chr11: 29246546-29251111 Eucalyptus grandis
Eucgr.K02142 1.0kb upstream 1.0kb upstream 1000 false Chr11: 29250112-29251111 Eucalyptus grandis
Eucgr.K02142 1.0kb downstream 1.0kb downstream 4566 true Chr11: 29245546-29250111 Eucalyptus grandis
Eucgr.K02142 1.0kb downstream 1.0kb downstream 1000 false Chr11: 29245546-29246545 Eucalyptus grandis
Eucgr.K02142 2.0kb upstream 2.0kb upstream 5566 true Chr11: 29246546-29252111 Eucalyptus grandis
Eucgr.K02142 2.0kb upstream 2.0kb upstream 2000 false Chr11: 29250112-29252111 Eucalyptus grandis
Eucgr.K02142 2.0kb downstream 2.0kb downstream 5566 true Chr11: 29244546-29250111 Eucalyptus grandis
Eucgr.K02142 2.0kb downstream 2.0kb downstream 2000 false Chr11: 29244546-29246545 Eucalyptus grandis
Eucgr.K02142 5.0kb upstream 5.0kb upstream 8566 true Chr11: 29246546-29255111 Eucalyptus grandis
Eucgr.K02142 5.0kb upstream 5.0kb upstream 5000 false Chr11: 29250112-29255111 Eucalyptus grandis
Eucgr.K02142 5.0kb downstream 5.0kb downstream 8566 true Chr11: 29241546-29250111 Eucalyptus grandis
Eucgr.K02142 5.0kb downstream 5.0kb downstream 5000 false Chr11: 29241546-29246545 Eucalyptus grandis
Eucgr.K02142 10.0kb upstream 10.0kb upstream 13566 true Chr11: 29246546-29260111 Eucalyptus grandis
Eucgr.K02142 10.0kb upstream 10.0kb upstream 10000 false Chr11: 29250112-29260111 Eucalyptus grandis
Eucgr.K02142 10.0kb downstream 10.0kb downstream 13566 true Chr11: 29236546-29250111 Eucalyptus grandis
Eucgr.K02142 10.0kb downstream 10.0kb downstream 10000 false Chr11: 29236546-29246545 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.3839 0.0 74.5231 High Low
cufflinks 45.42 0.0 112.349 High  
cufflinks 41.4964 0.0 102.243 High  
cufflinks 77.5224 0.0 201.377 High High
cufflinks 56.0982 0.0 140.6 High  
cufflinks 36.8162 0.0 90.7816 High  

0 Strain