Gene : Eucgr.K02099 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1752
Name:  ? Eucgr.K02099 Secondary Identifier:  ? PAC:32069507
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02099 0.5kb upstream 0.5kb upstream 2813 true Chr11: 28663380-28666192 Eucalyptus grandis
Eucgr.K02099 0.5kb upstream 0.5kb upstream 500 false Chr11: 28665693-28666192 Eucalyptus grandis
Eucgr.K02099 0.5kb downstream 0.5kb downstream 2813 true Chr11: 28662880-28665692 Eucalyptus grandis
Eucgr.K02099 0.5kb downstream 0.5kb downstream 500 false Chr11: 28662880-28663379 Eucalyptus grandis
Eucgr.K02099 1.0kb upstream 1.0kb upstream 3313 true Chr11: 28663380-28666692 Eucalyptus grandis
Eucgr.K02099 1.0kb upstream 1.0kb upstream 1000 false Chr11: 28665693-28666692 Eucalyptus grandis
Eucgr.K02099 1.0kb downstream 1.0kb downstream 3313 true Chr11: 28662380-28665692 Eucalyptus grandis
Eucgr.K02099 1.0kb downstream 1.0kb downstream 1000 false Chr11: 28662380-28663379 Eucalyptus grandis
Eucgr.K02099 2.0kb upstream 2.0kb upstream 4313 true Chr11: 28663380-28667692 Eucalyptus grandis
Eucgr.K02099 2.0kb upstream 2.0kb upstream 2000 false Chr11: 28665693-28667692 Eucalyptus grandis
Eucgr.K02099 2.0kb downstream 2.0kb downstream 4313 true Chr11: 28661380-28665692 Eucalyptus grandis
Eucgr.K02099 2.0kb downstream 2.0kb downstream 2000 false Chr11: 28661380-28663379 Eucalyptus grandis
Eucgr.K02099 5.0kb upstream 5.0kb upstream 7313 true Chr11: 28663380-28670692 Eucalyptus grandis
Eucgr.K02099 5.0kb upstream 5.0kb upstream 5000 false Chr11: 28665693-28670692 Eucalyptus grandis
Eucgr.K02099 5.0kb downstream 5.0kb downstream 7313 true Chr11: 28658380-28665692 Eucalyptus grandis
Eucgr.K02099 5.0kb downstream 5.0kb downstream 5000 false Chr11: 28658380-28663379 Eucalyptus grandis
Eucgr.K02099 10.0kb upstream 10.0kb upstream 12313 true Chr11: 28663380-28675692 Eucalyptus grandis
Eucgr.K02099 10.0kb upstream 10.0kb upstream 10000 false Chr11: 28665693-28675692 Eucalyptus grandis
Eucgr.K02099 10.0kb downstream 10.0kb downstream 12313 true Chr11: 28653380-28665692 Eucalyptus grandis
Eucgr.K02099 10.0kb downstream 10.0kb downstream 10000 false Chr11: 28653380-28663379 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065853 5270 Rosid View MSA
123740694 5271 Pentapetalae View MSA
122786557 5272 Eudicot View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.27897 0.0 3.52392    
cufflinks 2.94608 0.0 7.4   High
cufflinks 1.39492 0.0 3.79178    
cufflinks 1.82441 0.0 4.80776    
cufflinks 0.649012 0.0 1.91461 Low Low
cufflinks 2.12577 0.0 5.61271    

0 Strain