Gene : Eucgr.K02538 E. grandis v2.0
Defline:  (1 of 1) PTHR24015:SF831 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL Genomic Order:  2138
Name:  ? Eucgr.K02538 Secondary Identifier:  ? PAC:32068766
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02538 0.5kb upstream 0.5kb upstream 2510 true Chr11: 33273494-33276003 Eucalyptus grandis
Eucgr.K02538 0.5kb upstream 0.5kb upstream 500 false Chr11: 33273494-33273993 Eucalyptus grandis
Eucgr.K02538 0.5kb downstream 0.5kb downstream 2510 true Chr11: 33273994-33276503 Eucalyptus grandis
Eucgr.K02538 0.5kb downstream 0.5kb downstream 500 false Chr11: 33276004-33276503 Eucalyptus grandis
Eucgr.K02538 1.0kb upstream 1.0kb upstream 3010 true Chr11: 33272994-33276003 Eucalyptus grandis
Eucgr.K02538 1.0kb upstream 1.0kb upstream 1000 false Chr11: 33272994-33273993 Eucalyptus grandis
Eucgr.K02538 1.0kb downstream 1.0kb downstream 3010 true Chr11: 33273994-33277003 Eucalyptus grandis
Eucgr.K02538 1.0kb downstream 1.0kb downstream 1000 false Chr11: 33276004-33277003 Eucalyptus grandis
Eucgr.K02538 2.0kb upstream 2.0kb upstream 4010 true Chr11: 33271994-33276003 Eucalyptus grandis
Eucgr.K02538 2.0kb upstream 2.0kb upstream 2000 false Chr11: 33271994-33273993 Eucalyptus grandis
Eucgr.K02538 2.0kb downstream 2.0kb downstream 4010 true Chr11: 33273994-33278003 Eucalyptus grandis
Eucgr.K02538 2.0kb downstream 2.0kb downstream 2000 false Chr11: 33276004-33278003 Eucalyptus grandis
Eucgr.K02538 5.0kb upstream 5.0kb upstream 7010 true Chr11: 33268994-33276003 Eucalyptus grandis
Eucgr.K02538 5.0kb upstream 5.0kb upstream 5000 false Chr11: 33268994-33273993 Eucalyptus grandis
Eucgr.K02538 5.0kb downstream 5.0kb downstream 7010 true Chr11: 33273994-33281003 Eucalyptus grandis
Eucgr.K02538 5.0kb downstream 5.0kb downstream 5000 false Chr11: 33276004-33281003 Eucalyptus grandis
Eucgr.K02538 10.0kb upstream 10.0kb upstream 12010 true Chr11: 33263994-33276003 Eucalyptus grandis
Eucgr.K02538 10.0kb upstream 10.0kb upstream 10000 false Chr11: 33263994-33273993 Eucalyptus grandis
Eucgr.K02538 10.0kb downstream 10.0kb downstream 12010 true Chr11: 33273994-33286003 Eucalyptus grandis
Eucgr.K02538 10.0kb downstream 10.0kb downstream 10000 false Chr11: 33276004-33286003 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060822 5270 Rosid View MSA
123741492 5271 Pentapetalae View MSA
122788811 5272 Eudicot View MSA
122044715 5273 Angiosperm View MSA
121310333 5274 Embryophyte View MSA
123347846 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.71011 0.0 22.101    
cufflinks 4.42706 0.0 10.7476   Low
cufflinks 7.05473 0.0 16.4012    
cufflinks 9.64726 0.0 21.8705    
cufflinks 6.41797 0.0 15.0777    
cufflinks 8.43617 0.0 19.3835    

0 Strain