Gene : Eucgr.K02462 E. grandis v2.0
Defline:  (1 of 3) PTHR11124 - VACUOLAR SORTING PROTEIN VPS29 Genomic Order:  2069
Name:  ? Eucgr.K02462 Secondary Identifier:  ? PAC:32067339
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02462 0.5kb upstream 0.5kb upstream 3874 true Chr11: 32699788-32703661 Eucalyptus grandis
Eucgr.K02462 0.5kb upstream 0.5kb upstream 500 false Chr11: 32703162-32703661 Eucalyptus grandis
Eucgr.K02462 0.5kb downstream 0.5kb downstream 3874 true Chr11: 32699288-32703161 Eucalyptus grandis
Eucgr.K02462 0.5kb downstream 0.5kb downstream 500 false Chr11: 32699288-32699787 Eucalyptus grandis
Eucgr.K02462 1.0kb upstream 1.0kb upstream 4374 true Chr11: 32699788-32704161 Eucalyptus grandis
Eucgr.K02462 1.0kb upstream 1.0kb upstream 1000 false Chr11: 32703162-32704161 Eucalyptus grandis
Eucgr.K02462 1.0kb downstream 1.0kb downstream 4374 true Chr11: 32698788-32703161 Eucalyptus grandis
Eucgr.K02462 1.0kb downstream 1.0kb downstream 1000 false Chr11: 32698788-32699787 Eucalyptus grandis
Eucgr.K02462 2.0kb upstream 2.0kb upstream 5374 true Chr11: 32699788-32705161 Eucalyptus grandis
Eucgr.K02462 2.0kb upstream 2.0kb upstream 2000 false Chr11: 32703162-32705161 Eucalyptus grandis
Eucgr.K02462 2.0kb downstream 2.0kb downstream 5374 true Chr11: 32697788-32703161 Eucalyptus grandis
Eucgr.K02462 2.0kb downstream 2.0kb downstream 2000 false Chr11: 32697788-32699787 Eucalyptus grandis
Eucgr.K02462 5.0kb upstream 5.0kb upstream 8374 true Chr11: 32699788-32708161 Eucalyptus grandis
Eucgr.K02462 5.0kb upstream 5.0kb upstream 5000 false Chr11: 32703162-32708161 Eucalyptus grandis
Eucgr.K02462 5.0kb downstream 5.0kb downstream 8374 true Chr11: 32694788-32703161 Eucalyptus grandis
Eucgr.K02462 5.0kb downstream 5.0kb downstream 5000 false Chr11: 32694788-32699787 Eucalyptus grandis
Eucgr.K02462 10.0kb upstream 10.0kb upstream 13374 true Chr11: 32699788-32713161 Eucalyptus grandis
Eucgr.K02462 10.0kb upstream 10.0kb upstream 10000 false Chr11: 32703162-32713161 Eucalyptus grandis
Eucgr.K02462 10.0kb downstream 10.0kb downstream 13374 true Chr11: 32689788-32703161 Eucalyptus grandis
Eucgr.K02462 10.0kb downstream 10.0kb downstream 10000 false Chr11: 32689788-32699787 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071774 5270 Rosid View MSA
123736460 5271 Pentapetalae View MSA
122787236 5272 Eudicot View MSA
122043646 5273 Angiosperm View MSA
121346806 5274 Embryophyte View MSA
123424212 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.0469 0.0 133.548 High  
cufflinks 73.2613 0.0 197.53 High  
cufflinks 48.8743 0.0 132.696 High  
cufflinks 85.5236 0.0 233.971 High High
cufflinks 70.5674 0.0 189.684 High  
cufflinks 48.3819 0.0 120.562 High  

0 Strain